View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_96 (Length: 251)
Name: NF1084_low_96
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_96 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 9736638 - 9736423
Alignment:
| Q |
38 |
tcaaacaactccattt-aaattcatcattctcttcttcaatcaatattgttgctagtggtttcaaaagtaaatttaaattattttctttcagatatgcac |
136 |
Q |
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| T |
9736638 |
tcaaacaactccattttaaattcatcattctctccttcaatcaatattgttgccagtggtttcaaaagtaaatttaaattattttctttcagatatgcac |
9736539 |
T |
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| Q |
137 |
tgttactactgacttcagaagc-nnnnnnnccaacacaaacaaccaagtacatgtttggttcattagcaataaattatctactttaataaccgtgatttc |
235 |
Q |
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| T |
9736538 |
tgttactactgacttcagaagcaaaaaaaaccaacacaaacaaccaagtacatgtttggttcattagcaataaattatctactttaataaccgtgatttc |
9736439 |
T |
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| Q |
236 |
cttgattaacaggtat |
251 |
Q |
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|||||||||||||||| |
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| T |
9736438 |
cttgattaacaggtat |
9736423 |
T |
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