View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_98 (Length: 251)

Name: NF1084_low_98
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_98
NF1084_low_98
[»] chr3 (3 HSPs)
chr3 (47-238)||(53534854-53535042)
chr3 (47-79)||(53533654-53533686)
chr3 (47-79)||(53536951-53536983)
[»] chr1 (3 HSPs)
chr1 (47-230)||(4753423-4753603)
chr1 (74-238)||(38202442-38202604)
chr1 (47-79)||(4756677-4756709)
[»] chr8 (2 HSPs)
chr8 (47-230)||(42915883-42916063)
chr8 (47-79)||(42919146-42919178)
[»] chr7 (3 HSPs)
chr7 (50-230)||(23252770-23252947)
chr7 (47-238)||(21944680-21944868)
chr7 (47-79)||(23255547-23255579)
[»] chr5 (4 HSPs)
chr5 (47-238)||(19598759-19598947)
chr5 (1-48)||(16052321-16052368)
chr5 (66-169)||(13951464-13951564)
chr5 (2-41)||(42564264-42564303)
[»] chr4 (3 HSPs)
chr4 (51-238)||(13096248-13096431)
chr4 (47-238)||(17382381-17382568)
chr4 (42-103)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (124-238)||(41543723-41543835)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 53535042 - 53534854
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 146  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53535042 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 53534946  T
Q  147 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 238  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  53534945 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatggttc 53534854  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 53533686 - 53533654
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttg 79  Q
    |||||||||||||||||||||||||||||||||    
T  53533686 tactccctccgtcccacaatgtaagtcgctttg 53533654  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 53536983 - 53536951
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttg 79  Q
    ||||||||||||||||||| |||||||||||||    
T  53536983 tactccctccgtcccacaaggtaagtcgctttg 53536951  T

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Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 47 - 230
Target Start/End: Original strand, 4753423 - 4753603
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 146  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4753423 tactccctccgtcccacaatgtaagtcgctttgacacttttacgtatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 4753519  T
Q  147 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 230  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4753520 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattca 4753603  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 38202604 - 38202442
Alignment:
Q  74 gctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtttt-cctcttttacctttggcaacacaa 172  Q
    ||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  38202604 gctttgacacttttacacatattaagaaata---tttaacttttgtgaactttgttaaaattagatatgtttttttcctcttttacccttggcaacacaa 38202508  T
Q  173 ttactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 238  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  38202507 ttactccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 38202442  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 4756709 - 4756677
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttg 79  Q
    |||||||||||||||||||||||||||||||||    
T  4756709 tactccctccgtcccacaatgtaagtcgctttg 4756677  T

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Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 47 - 230
Target Start/End: Original strand, 42915883 - 42916063
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 146  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  42915883 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgtt 42915979  T
Q  147 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 230  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  42915980 ttcctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 42916063  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 42919178 - 42919146
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttg 79  Q
    |||||||||||||||||||| ||||||||||||    
T  42919178 tactccctccgtcccacaatataagtcgctttg 42919146  T

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Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 230
Target Start/End: Original strand, 23252770 - 23252947
Alignment:
Q  50 tccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttc 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  23252770 tccctccgtcccacaatgtaagtcgctttgacattttttcgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgttttc 23252866  T
Q  150 ctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 230  Q
    |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  23252867 ctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 23252947  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 21944680 - 21944868
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 146  Q
    |||||| ||||| ||| | |||| || |||||| || ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  21944680 tactccttccgttccaaattgtacgttgctttggcacttttacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 21944776  T
Q  147 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 238  Q
    ||||||||||| | |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  21944777 ttcctcttttatccttggcaacacaattactccaacttgattgtcaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 21944868  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 23255579 - 23255547
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttg 79  Q
    |||||||||||||||||||||||||||||||||    
T  23255579 tactccctccgtcccacaatgtaagtcgctttg 23255547  T

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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 19598759 - 19598947
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 146  Q
    |||||||||||||||| | | || | ||||||| || || |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  19598759 tactccctccgtcccaaattatatgccgctttggcacttctacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 19598855  T
Q  147 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 238  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||| |||||    
T  19598856 ttcctcttttacccttggcaacacaattactccaacttgattgccaccgtcccaaattcctcaaactccaaggcaatgaattcacacggttc 19598947  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16052368 - 16052321
Alignment:
Q  1 tcaattatgcagtaatcacccacttattgcttgtattagcttatacta 48  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  16052368 tcaattatgcagtaatcaaccacttattgcttgtattagcttatacta 16052321  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 13951464 - 13951564
Alignment:
Q  66 tgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcctcttttacctttggc 165  Q
    |||| |||||||||||| ||||||| ||||||||||||    | |||||||||| |||||||| |||| ||||||| | ||| ||||||||||| ||| |    
T  13951464 tgtatgtcgctttgacacttttacgtatattaagaaatc---tctaacttttgtaaactttgtcaaaagtaaatatatttttccctcttttacccttgac 13951560  T
Q  166 aaca 169  Q
    ||||    
T  13951561 aaca 13951564  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 42564303 - 42564264
Alignment:
Q  2 caattatgcagtaatcacccacttattgcttgtattagct 41  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  42564303 caattatgcagtaatcaccaatttattgcttgtattagct 42564264  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 13096431 - 13096248
Alignment:
Q  51 ccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcc 150  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||    
T  13096431 ccctccgtcccaaattgtatgtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgttttttcc 13096335  T
Q  151 tcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 238  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  | ||| ||||||||||||| |||| | |||||||||| |||||    
T  13096334 tcttttacccttggcaacacaattaccccaacttgattgccaccgt-ccaaattcctccaactctaaggaattgaattcacacggttc 13096248  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 17382568 - 17382381
Alignment:
Q  47 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 146  Q
    |||||||||||| ||| | |||| ||||||||| || |||||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| ||    
T  17382568 tactccctccgttccaaattgtacgtcgctttggcacttttacacatattaagaaatc---tttaacttttgtgaactttgttaaaattagatatgt-tt 17382473  T
Q  147 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 238  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  17382472 ttcctcttttacccttggcaacacaattattccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 17382381  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 25063602 - 25063663
Alignment:
Q  42 tatactactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaat 103  Q
    ||||||||||||||||||||| | |||||| || |||| || ||| || |||||||||||||    
T  25063602 tatactactccctccgtcccaaattgtaagacgttttggcaatttcacacatattaagaaat 25063663  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 41543723 - 41543835
Alignment:
Q  124 tttgttaaaattaaatatgtgttttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaat 223  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||    
T  41543723 tttgtgaaaattaaatatgt-ttttcctcttttacccttggcaacacaattactccaacttgattg-caccgtcccaaattcctccaactccaaggcaat 41543820  T
Q  224 gaattcacatggttc 238  Q
    ||||||||| |||||    
T  41543821 gaattcacacggttc 41543835  T

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