View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10850_low_10 (Length: 204)
Name: NF10850_low_10
Description: NF10850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10850_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 9164130 - 9163956
Alignment:
| Q |
20 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164130 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
9164031 |
T |
|
| Q |
120 |
tgttaaagatggattttataatttcactgttgatcatttggatatatttccctataaggtgcttcctttgcttct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
9164030 |
tgttaaagatggattttataatttcactgttgatcatttggatatatttccctataagatgcttcctttggttct |
9163956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 9220465 - 9220291
Alignment:
| Q |
20 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9220465 |
gttgtcaagttgatattccacatatgatgaggaatataagtgtacaagtttctgattttcctaattccacggattctttggggtgtagttattcatttgt |
9220366 |
T |
|
| Q |
120 |
tgttaaagatggattttataatttcactgttgatcatttggatatatttccctataaggtgcttcctttgcttct |
194 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||| ||||| |||||| ||||||| ||| |||| |
|
|
| T |
9220365 |
tgttaaagatggatcctataattttactgtttctcatttggataattttccttataagatgcttccattgattct |
9220291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 9158015 - 9157872
Alignment:
| Q |
20 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9158015 |
gttgtcaagttgatattccacctatgatgaggaatataagtatagaagcttctgattttcctaattccacggattctttggggtgtagttattcatttgt |
9157916 |
T |
|
| Q |
120 |
tgttaaagatggattttataatttcactgttgatcatttggata |
163 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
9157915 |
tgttaaagatgggttttataatttttctatttctcatttggata |
9157872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 9175972 - 9175842
Alignment:
| Q |
20 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||| || ||| | || ||||| || ||||| |||| ||||| |
|
|
| T |
9175972 |
gttgtcaagttgatattccacctatgatgaggaatataactatacaagcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgt |
9175873 |
T |
|
| Q |
120 |
tgttaaagatggattttataatttcactgtt |
150 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
9175872 |
tgttaaaaatggattttataatttcactgtt |
9175842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 9114447 - 9114597
Alignment:
| Q |
20 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
119 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||| | || ||||||||| |||| |||||||| || ||||| | ||||| ||||| ||||| |
|
|
| T |
9114447 |
gttgtgaagttgatattccacctaagatgaggaatataactatagaagcttttgctttttttaattccaatgaatctttgagatgtagatattcttttgt |
9114546 |
T |
|
| Q |
120 |
tgttaaagatggattttataatttcactgttgatcatttggatatatttcc |
170 |
Q |
| |
|
||||||| ||||| ||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
9114547 |
tgttaaaaatggagcttataatttttctgtttctcatttggacaaatttcc |
9114597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 9203001 - 9202871
Alignment:
| Q |
20 |
gttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||| ||| | ||| || ||| | || ||||| || ||||| |||| ||||| |
|
|
| T |
9203001 |
gttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgt |
9202902 |
T |
|
| Q |
120 |
tgttaaagatggattttataatttcactgtt |
150 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |
|
|
| T |
9202901 |
tgttaaaaatggattttataatttctctgtt |
9202871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University