View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10850_low_2 (Length: 294)
Name: NF10850_low_2
Description: NF10850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10850_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 46184000 - 46184126
Alignment:
| Q |
17 |
agagatatacagtgaaagttatcaaaagtagagaattgaaagacaatctattagttaaaactcgagtgtaaacttgtgaacatttcatgccacaatatgt |
116 |
Q |
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| T |
46184000 |
agagatatatagtgaaagttatcaaaagtagagaattgaaagacaatctattagttaaaactcgagtgtaaacttgtcaacatttcatgccacaatatgt |
46184099 |
T |
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| Q |
117 |
taaataacacacactcataatttcatt |
143 |
Q |
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| T |
46184100 |
taaataacacacactcataatttcatt |
46184126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 46184246 - 46184291
Alignment:
| Q |
232 |
gtattataagaatatatattgctttcacaataagataatattggtt |
277 |
Q |
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| T |
46184246 |
gtattataagaatatatattgctttcacaataagataatattggtt |
46184291 |
T |
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