View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10850_low_3 (Length: 280)
Name: NF10850_low_3
Description: NF10850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10850_low_3 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 5383012 - 5383264
Alignment:
| Q |
15 |
aaaacttccatttattttgtatgttttttctctaaattctctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5383012 |
aaaacttccatttattttgtatgttttttctctaaattctctttataatatttatgttcttgcagaggatggagatactgaaaatcctaaaccttagtca |
5383111 |
T |
|
| Q |
115 |
ttctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5383112 |
ttctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtccgaggttgtccgaggtttctcctagc |
5383211 |
T |
|
| Q |
215 |
attggagatctcaagaaaattcttctgattaatttggaagactgtgttagcct |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5383212 |
attggagatctcaagaaaattcttctgattaatttggaagactgtgttagcct |
5383264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 64 - 267
Target Start/End: Original strand, 5344596 - 5344799
Alignment:
| Q |
64 |
atttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatctt |
163 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||| || || ||||||||||||||||||||| | || ||||| ||||| || | || ||||||||| |
|
|
| T |
5344596 |
atttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatctt |
5344695 |
T |
|
| Q |
164 |
gaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgtta |
263 |
Q |
| |
|
|||||| ||||||||| ||||||| || |||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
5344696 |
gaaaagttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaattcttctcattaatttggaagactgtatta |
5344795 |
T |
|
| Q |
264 |
gcct |
267 |
Q |
| |
|
|||| |
|
|
| T |
5344796 |
gcct |
5344799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 5278297 - 5278505
Alignment:
| Q |
60 |
taatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa |
159 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| ||||||||||||| ||||| ||||||| |
|
|
| T |
5278297 |
taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaa |
5278396 |
T |
|
| Q |
160 |
tcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
|||||||||||| ||||| |||||| | ||||||| |||||||||| |||||||||| ||||| | |||||||||||||| || |||||||| ||| |
|
|
| T |
5278397 |
tcttgaaaagcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttggaagattgt |
5278496 |
T |
|
| Q |
260 |
gttagcctt |
268 |
Q |
| |
|
|||||||| |
|
|
| T |
5278497 |
attagcctt |
5278505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 5433775 - 5433961
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| || ||||||||||||| |||||| ||| || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
5433775 |
tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaa |
5433874 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaaga |
255 |
Q |
| |
|
| |||||||| ||||||||| || | || ||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5433875 |
gttagtactcacagattgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatttggaaga |
5433961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 5176470 - 5176678
Alignment:
| Q |
60 |
taatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa |
159 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| ||||||||||||| ||||| ||||||| |
|
|
| T |
5176470 |
taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaa |
5176569 |
T |
|
| Q |
160 |
tcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
|||||||||||| ||||| |||||| | |||||| |||||||| | |||||||||| ||||| | |||||||||||||| || |||||||| ||| |
|
|
| T |
5176570 |
tcttgaaaagcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttggaagattgt |
5176669 |
T |
|
| Q |
260 |
gttagcctt |
268 |
Q |
| |
|
|||||||| |
|
|
| T |
5176670 |
attagcctt |
5176678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 5128759 - 5128572
Alignment:
| Q |
68 |
atgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaa |
167 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| || || | |||||||||||||| ||| || ||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
5128759 |
atgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaa |
5128660 |
T |
|
| Q |
168 |
agctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaaga |
255 |
Q |
| |
|
||||||||||| ||||||| | |||||| ||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
5128659 |
agctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatttggaaga |
5128572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 5074241 - 5074063
Alignment:
| Q |
77 |
cagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtac |
176 |
Q |
| |
|
|||||| |||||| ||||||||| || || ||||||||||||||||| ||| ||| || ||||| || ||||| ||||||||||||||| | ||||||| |
|
|
| T |
5074241 |
cagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtac |
5074142 |
T |
|
| Q |
177 |
tcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaaga |
255 |
Q |
| |
|
|| ||||||||| |||||||| |||||||||| ||| |||| | ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
5074141 |
tcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaaga |
5074063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 269
Target Start/End: Complemental strand, 5690509 - 5690300
Alignment:
| Q |
60 |
taatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa |
159 |
Q |
| |
|
|||||||||| |||||| ||| |||||||| ||| ||||| || || |||||||| |||||||| ||| |||||||||||||| |||| ||||||| |
|
|
| T |
5690509 |
taatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatcatgcctaa |
5690410 |
T |
|
| Q |
160 |
tcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||| |||||||| | |||||||||| ||||| | |||||||||||||| ||||||||||| ||| |
|
|
| T |
5690409 |
tcttgaaaagctaatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatttggaagattgt |
5690310 |
T |
|
| Q |
260 |
gttagccttt |
269 |
Q |
| |
|
||||||||| |
|
|
| T |
5690309 |
attagccttt |
5690300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 268
Target Start/End: Complemental strand, 5067035 - 5066836
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||| |||||||||| ||| |||| ||||| ||||| ||| || |||||||||||||||| |
|
|
| T |
5067035 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatcttgaaaa |
5066936 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||||| || ||| | |||| |||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5066935 |
gctagtactcaaagattgtccaatattgtccgaggtttctcctacaataggaaaactcagtgaaattcttctaatagatttggaagattgtgttagcctt |
5066836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 268
Target Start/End: Complemental strand, 5157969 - 5157770
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||| ||||| |||||||||||||||| ||| ||| ||||||||||| ||| | ||||||||||||| || |
|
|
| T |
5157969 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
5157870 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
||| |||||| |||||||| | |||||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5157869 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtgttagcctt |
5157770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 268
Target Start/End: Complemental strand, 5147271 - 5147038
Alignment:
| Q |
34 |
tatgttttttctctaaattctctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcag |
133 |
Q |
| |
|
||||||| ||| |||| || ||| ||||| || ||||||||||||||||||||||| ||| ||||| || || |||||||| |||||||| || ||| |
|
|
| T |
5147271 |
tatgtttcttccctaatttttctatataa-atctatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacag |
5147173 |
T |
|
| Q |
134 |
accccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaa |
233 |
Q |
| |
|
|||||| |||| | ||| ||||||||||||||| | ||||||||| | ||||||| | |||||| || ||||||| ||| |||||| ||||||| |||| |
|
|
| T |
5147172 |
accccaaactttttaaacttgcctaatcttgaacaactagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaa |
5147073 |
T |
|
| Q |
234 |
ttcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
5147072 |
ttcttctgataaatttggaagattgtactagcctt |
5147038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 5182283 - 5182069
Alignment:
| Q |
54 |
tctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaattt |
153 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||| ||||||||| || || |||||||||||||||| ||| |||| |||||||| ||||| || |
|
|
| T |
5182283 |
tctttataacatttctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaactt |
5182184 |
T |
|
| Q |
154 |
gcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaa |
253 |
Q |
| |
|
|||||| |||||| || |||||||| ||||||||| || |||||| || ||||| | || |||||||||||||| ||||| ||| |||| ||||||||| |
|
|
| T |
5182183 |
gcctaaccttgaacagttagtactcacagattgtccgaagttgtctgaagtttcccaaagtattggagatctcaataaaatacttttgataaatttggaa |
5182084 |
T |
|
| Q |
254 |
gactgtgttagcctt |
268 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
5182083 |
gattgcattagcctt |
5182069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 5096448 - 5096647
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||| |||||||||||||||| ||| || ||||||||||| ||| | ||||||||||||| || |
|
|
| T |
5096448 |
tgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatcttgagaa |
5096547 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
||| ||||| |||||||| | |||||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5096548 |
gctggtacttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtgttagcctt |
5096647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 69 - 268
Target Start/End: Complemental strand, 5102955 - 5102756
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
|||||||||||||| |||| | ||||||||| ||||| |||||||||||||||| ||| ||| ||||| ||||| ||| | |||||||||||||| || |
|
|
| T |
5102955 |
tgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatcttgagaa |
5102856 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
||| |||||| |||||||| | |||||| ||||||| ||||| |||||||||||||| |||| ||||| || |||||||||| |||||||||||| |
|
|
| T |
5102855 |
gctggtactcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaatacttctaatagatttggaagattgtgttagcctt |
5102756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 252
Target Start/End: Original strand, 5396675 - 5396873
Alignment:
| Q |
54 |
tctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaattt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||| || || ||||||||||||||||| || |||||||||||||| ||||| | |
|
|
| T |
5396675 |
tctttataatatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacat |
5396774 |
T |
|
| Q |
154 |
gcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttgga |
252 |
Q |
| |
|
||||||||||||| | |||||| || | ||||||| | |||||| || ||||| | || ||||||||||| || ||||| ||||| || |||||||| |
|
|
| T |
5396775 |
gcctaatcttgaacaactagtagtcactgattgtccaaagttgtcagaagtttcccataatattggagatctgaaaaaaatacttctaataaatttgga |
5396873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 5447410 - 5447513
Alignment:
| Q |
152 |
ttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttgg |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
5447410 |
ttgcctaatcttgaaaagctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatttgg |
5447509 |
T |
|
| Q |
252 |
aaga |
255 |
Q |
| |
|
|||| |
|
|
| T |
5447510 |
aaga |
5447513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 5350218 - 5350333
Alignment:
| Q |
153 |
tgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttgga |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
5350218 |
tgcctaatcttgaaaagctagtactcaaagattgtccaatgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaatagatttgga |
5350317 |
T |
|
| Q |
253 |
agactgtgttagcctt |
268 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
5350318 |
ggattgtgttagcctt |
5350333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 5284740 - 5284564
Alignment:
| Q |
59 |
ataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgccta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| ||||| || | | ||| ||||| || || |||||| |
|
|
| T |
5284740 |
ataatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgccta |
5284641 |
T |
|
| Q |
159 |
atcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaatt |
235 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||| | || |||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
5284640 |
atcttgaaaagctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctcaataaaatt |
5284564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 5370311 - 5370510
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||| ||||| |||||||||||||||| ||| ||| ||||||||||| ||| | |||||||| |||||||| |
|
|
| T |
5370311 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
5370410 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
| |||||||| ||||||| | | |||| |||||||||||||||||||| ||||| |||||||||| || |||| ||||| |||||||||||| |
|
|
| T |
5370411 |
gttagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtgttagcctt |
5370510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 69 - 268
Target Start/End: Complemental strand, 5244208 - 5244009
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
|||||||| || |||||| | ||| ||||| ||||| |||||||||||||||| ||| ||| ||||||||||| ||| | || | ||||||||||| |
|
|
| T |
5244208 |
tgttcttgtggatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaa |
5244109 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgag-gttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcct |
267 |
Q |
| |
|
|||||||||| ||||||| | || |||||||||| |||||||||||||||| |||||| |||||||||| || |||||||||| ||||||||||| |
|
|
| T |
5244108 |
gctagtactcaaagattgt-tcagtgttgtccgagatttctcctagcattgggaatctcagtgaaattcttctaatagatttggaagattgtgttagcct |
5244010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 258
Target Start/End: Complemental strand, 5354964 - 5354766
Alignment:
| Q |
60 |
taatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa |
159 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||||||| || || ||||||||||| |||| ||| || ||||| ||||| || | ||||||| |
|
|
| T |
5354964 |
taatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttacatgcctaa |
5354865 |
T |
|
| Q |
160 |
tcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactg |
258 |
Q |
| |
|
|||||||||||| |||||| |||||||| | ||| || || |||||||| ||||||||| ||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
5354864 |
tcttgaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaataaaattcttctgataaatttcaaagactg |
5354766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 5425650 - 5425849
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
|||| |||||| ||||||| | ||||||||| ||||| |||||||||||||||| ||| || ||||| ||||| || |||||||||||||||| |
|
|
| T |
5425650 |
tgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaaa |
5425749 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
||| || ||| |||||||| | |||||| ||| ||||||||||||||||| |||||| |||||||||| || ||||| ||||| |||||| ||||| |
|
|
| T |
5425750 |
gctggtgctcaaagattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatttagaagattgtgttcgcctt |
5425849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 265
Target Start/End: Complemental strand, 5257685 - 5257479
Alignment:
| Q |
59 |
ataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgccta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| | || || | ||| ||||| || || |||||| |
|
|
| T |
5257685 |
ataatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgccta |
5257586 |
T |
|
| Q |
159 |
atcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactg |
258 |
Q |
| |
|
||||||||||| |||||||| |||||||| | | | || ||||||| | ||||||||| |||||||||||||| || |||| ||||||||||| || |
|
|
| T |
5257585 |
atcttgaaaagttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctcaagaaaattgttttgataaatttggaagattg |
5257486 |
T |
|
| Q |
259 |
tgttagc |
265 |
Q |
| |
|
| ||||| |
|
|
| T |
5257485 |
tattagc |
5257479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 267
Target Start/End: Original strand, 5446897 - 5447095
Alignment:
| Q |
69 |
tgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
168 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || || ||||| ||||| || || || || | ||| ||||| ||||| |||||||||| |||| |
|
|
| T |
5446897 |
tgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaatcttcaaaa |
5446996 |
T |
|
| Q |
169 |
gctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagcct |
267 |
Q |
| |
|
||||||||| |||||| | |||||| |||||||| |||||||| || ||||||| |||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
5446997 |
actagtactcaaagattgcccactgttgtctgaggtttcacctagcatcagacatctcaataaaattcttctgataaacttggaagactgcattagcct |
5447095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 9295 - 9042
Alignment:
| Q |
15 |
aaaacttccatttattttgtatgttttttctctaaattctctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtca |
114 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||| || || |||||||| |
|
|
| T |
9295 |
aaaacttccatttattttgtaagtttcttctctaaattctctttataatatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtca |
9196 |
T |
|
| Q |
115 |
ttctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagc |
214 |
Q |
| |
|
||||||||| || |||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| | |||| |||||||||||| || | |
|
|
| T |
9195 |
ttctcattatttgatgcataccccagacttttcatatttgcctaatcttgaaaagctagtactcaaagattgtccaatgttgaccgaggtttctcatacc |
9096 |
T |
|
| Q |
215 |
attggagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
|||||||||||| |||| ||||| || |||||||||| |||||||||||| |
|
|
| T |
9095 |
attggagatctcggtgaaatacttctaatagatttggaagattgtgttagcctt |
9042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 36214220 - 36213971
Alignment:
| Q |
19 |
cttccatttattttgtatgttttttctctaaattctctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattct |
118 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| || ||||||||| |||| |||||||||||||| |||| | ||||||||| || || |||||||||||| |
|
|
| T |
36214220 |
cttccatttattttttatgtttcttctctaagttttctttataacatttctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattct |
36214121 |
T |
|
| Q |
119 |
cattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattg |
218 |
Q |
| |
|
||||| ||| |||| ||||| || ||||| ||||||| |||||||| ||||||||| ||||||||| || ||||| |||||||| | || |||| |
|
|
| T |
36214120 |
cattatctgacaaagactccagatttttcaaacatgcctaaccttgaaaaactagtactcacagattgtccaagattgtctgaggtttcccacagtattg |
36214021 |
T |
|
| Q |
219 |
gagatctcaagaaaattcttctgattaatttggaagactgtgttagcctt |
268 |
Q |
| |
|
|| ||||||| ||| ||||||| || ||||||||||| ||| |||||||| |
|
|
| T |
36214020 |
gacatctcaataaagttcttctaataaatttggaagattgtattagcctt |
36213971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 259
Target Start/End: Original strand, 18935164 - 18935316
Alignment:
| Q |
107 |
cttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggttt |
206 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |||| ||||| ||||| |||||||||||| || ||||| |||||| | || |||||| ||||| |
|
|
| T |
18935164 |
cttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattgcccaagtttgtcctcggttt |
18935263 |
T |
|
| Q |
207 |
ctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
||| ||| || ||| |||||||||||||||| | || |||||| |||||||| |
|
|
| T |
18935264 |
ctcatagtataggacttctcaagaaaattcttttaataaatttgaaagactgt |
18935316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 34724889 - 34724737
Alignment:
| Q |
107 |
cttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggttt |
206 |
Q |
| |
|
||||||||||||||| || || || || |||||||| ||| | ||||| |||||||||||| || ||||| |||||||| | |||||| |||| |
|
|
| T |
34724889 |
cttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtccaaatttgtcctcagttt |
34724790 |
T |
|
| Q |
207 |
ctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
|||||| || ||| |||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
34724789 |
ctcctaatataggaaatctcaagaaaattctattgataaatttgaaagactgt |
34724737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 270
Target Start/End: Complemental strand, 4320971 - 4320759
Alignment:
| Q |
58 |
tataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcct |
157 |
Q |
| |
|
|||||||||| | || ||||||||||||||| |||||| || ||||| ||||||||||||||| | || |||||||| ||||| ||| | |||||| |
|
|
| T |
4320971 |
tataatatttttatttttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcct |
4320872 |
T |
|
| Q |
158 |
aatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagact |
257 |
Q |
| |
|
||||||||||||||||| |||| |||||| | ||| |||| ||||||| | |||||||||| ||||||| ||| || || |||| |||||| |||| | |
|
|
| T |
4320871 |
aatcttgaaaagctagtgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaaaaaagttgttttgataaatttgaaagatt |
4320772 |
T |
|
| Q |
258 |
gtgttagcctttg |
270 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4320771 |
gtattagcctttg |
4320759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 58 - 269
Target Start/End: Complemental strand, 4124291 - 4124080
Alignment:
| Q |
58 |
tataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcct |
157 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| ||||||||| || || ||||||||||||||||| ||| |||||||| ||||| ||| | |||||| |
|
|
| T |
4124291 |
tataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcct |
4124192 |
T |
|
| Q |
158 |
aatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagact |
257 |
Q |
| |
|
|| ||||||||||| |||||| |||||||| ||| |||| ||||| || | || |||||| |||| |||||| ||||| |||| |||||| |||| | |
|
|
| T |
4124191 |
aaccttgaaaagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagatt |
4124092 |
T |
|
| Q |
258 |
gtgttagccttt |
269 |
Q |
| |
|
|| |||||||| |
|
|
| T |
4124091 |
gtactagccttt |
4124080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 270
Target Start/End: Original strand, 4360808 - 4361018
Alignment:
| Q |
60 |
taatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa |
159 |
Q |
| |
|
||||||||||||| || ||| |||||||| ||||||||| || || |||||||||||||| || ||| ||||| || ||||| ||| | |||||||| |
|
|
| T |
4360808 |
taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa |
4360907 |
T |
|
| Q |
160 |
tcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||| ||| |||| | || |||||| ||||||||||||||||| |||| |||||| |||| || |
|
|
| T |
4360908 |
tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatttgaaagattgc |
4361007 |
T |
|
| Q |
260 |
gttagcctttg |
270 |
Q |
| |
|
|||||||||| |
|
|
| T |
4361008 |
attagcctttg |
4361018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 270
Target Start/End: Original strand, 4344377 - 4344587
Alignment:
| Q |
60 |
taatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa |
159 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| || || || ||||||||||||| ||| ||||| || ||||| ||| | |||||||| |
|
|
| T |
4344377 |
taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaa |
4344476 |
T |
|
| Q |
160 |
tcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgt |
259 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||| ||| |||| | || |||||| ||||||| ||||||||| |||| |||||| || | ||| |
|
|
| T |
4344477 |
tcttgaaaagctagtactcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaacaaaattcttttgataaatttgaaaaattgt |
4344576 |
T |
|
| Q |
260 |
gttagcctttg |
270 |
Q |
| |
|
|||||||||| |
|
|
| T |
4344577 |
attagcctttg |
4344587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 270
Target Start/End: Original strand, 4335073 - 4335286
Alignment:
| Q |
58 |
tataatatttatgtt-cttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcc |
156 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| | ||||||| || || ||||||||||||||||| || |||||||| || || ||| | ||||| |
|
|
| T |
4335073 |
tataatatttctgtttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcc |
4335172 |
T |
|
| Q |
157 |
taatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagac |
256 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||| |||| ||||| || | || |||||| |||| |||||| ||||| |||| |||||| |||| |
|
|
| T |
4335173 |
taatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagat |
4335272 |
T |
|
| Q |
257 |
tgtgttagcctttg |
270 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4335273 |
tgcattagcctttg |
4335286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 268
Target Start/End: Complemental strand, 4133787 - 4133565
Alignment:
| Q |
46 |
ctaaattctctttataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttc |
145 |
Q |
| |
|
|||| |||||| |||| |||| |||||||||||||| |||||| || ||| | || || |||||||||||||||| || || ||||||||||| || |
|
|
| T |
4133787 |
ctaagttctctacataacatttttgttcttgcagaggctggagaatctaaaatttctcaatcttagtcattctcattgtctagtacagaccccagatttt |
4133688 |
T |
|
| Q |
146 |
tcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgatta |
245 |
Q |
| |
|
||| | |||||||||| ||||| ||| ||||| |||||||| ||| |||| |||||||| | || |||||| ||||| | ||| |||| | || | |
|
|
| T |
4133687 |
tcacacatgcctaatctagaaaaactaatactcaaagattgtccaaggctgtctgaggtttcccataccattggtcatctccataaagttctcattataa |
4133588 |
T |
|
| Q |
246 |
atttggaagactgtgttagcctt |
268 |
Q |
| |
|
||||| |||||||| ||||||| |
|
|
| T |
4133587 |
atttgaaagactgtactagcctt |
4133565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 6837082 - 6837194
Alignment:
| Q |
137 |
ccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattc |
236 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||| ||| |||| || ||||| | ||| || | |||||||||| |||| | ||| ||| |
|
|
| T |
6837082 |
ccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttc |
6837181 |
T |
|
| Q |
237 |
ttctgattaattt |
249 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
6837182 |
ttctgataaattt |
6837194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 6532508 - 6532392
Alignment:
| Q |
134 |
accccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaa |
233 |
Q |
| |
|
|||||| |||| ||| || ||||||||||||||||| |||||||| ||| |||| || ||||| | ||| || | |||||||||| |||| | ||| |
|
|
| T |
6532508 |
accccaaacttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccaaaaac |
6532409 |
T |
|
| Q |
234 |
ttcttctgattaatttg |
250 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
6532408 |
ttcttctgataaatttg |
6532392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 6545724 - 6545680
Alignment:
| Q |
134 |
accccagacttctcaaatttgcctaatcttgaaaagctagtactc |
178 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
6545724 |
accccagacttttcatatatgcctaatcttgaaaagatagtactc |
6545680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 6772909 - 6772953
Alignment:
| Q |
134 |
accccagacttctcaaatttgcctaatcttgaaaagctagtactc |
178 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||||||||||||||||| |
|
|
| T |
6772909 |
accccagacttttcatacttgccgaatcttgaaaagctagtactc |
6772953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 47987204 - 47986995
Alignment:
| Q |
58 |
tataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcct |
157 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| | ||| ||||| || || ||||||||||||||||| || | | || ||||| ||||| ||||| |
|
|
| T |
47987204 |
tataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcct |
47987105 |
T |
|
| Q |
158 |
aatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagact |
257 |
Q |
| |
|
||||| ||||||||||||||| |||||| | | ||| || ||| ||||||||||||||||| ||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
47987104 |
aatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagact |
47987005 |
T |
|
| Q |
258 |
gtgttagcct |
267 |
Q |
| |
|
|| ||||||| |
|
|
| T |
47987004 |
gtattagcct |
47986995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 47996491 - 47996282
Alignment:
| Q |
58 |
tataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcct |
157 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| | ||| ||||| || || ||||||||||||||||| || | | || ||||| ||||| ||||| |
|
|
| T |
47996491 |
tataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcct |
47996392 |
T |
|
| Q |
158 |
aatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagact |
257 |
Q |
| |
|
||||| ||||||||||||||| |||||| | | ||| || ||| ||||||||||||||||| ||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
47996391 |
aatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagact |
47996292 |
T |
|
| Q |
258 |
gtgttagcct |
267 |
Q |
| |
|
|| ||||||| |
|
|
| T |
47996291 |
gtattagcct |
47996282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 48005778 - 48005569
Alignment:
| Q |
58 |
tataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcct |
157 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| | ||| ||||| || || ||||||||||||||||| || | | || ||||| ||||| ||||| |
|
|
| T |
48005778 |
tataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcct |
48005679 |
T |
|
| Q |
158 |
aatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagact |
257 |
Q |
| |
|
||||| ||||||||||||||| |||||| | | ||| || ||| ||||||||||||||||| ||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
48005678 |
aatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagact |
48005579 |
T |
|
| Q |
258 |
gtgttagcct |
267 |
Q |
| |
|
|| ||||||| |
|
|
| T |
48005578 |
gtattagcct |
48005569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 48015063 - 48014854
Alignment:
| Q |
58 |
tataatatttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcct |
157 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| | ||| ||||| || || ||||||||||||||||| || | | || ||||| ||||| ||||| |
|
|
| T |
48015063 |
tataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcct |
48014964 |
T |
|
| Q |
158 |
aatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagact |
257 |
Q |
| |
|
||||| ||||||||||||||| |||||| | | ||| || ||| ||||||||||||||||| ||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
48014963 |
aatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagact |
48014864 |
T |
|
| Q |
258 |
gtgttagcct |
267 |
Q |
| |
|
|| ||||||| |
|
|
| T |
48014863 |
gtattagcct |
48014854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 8877344 - 8877476
Alignment:
| Q |
64 |
atttatgttcttgcagaggatggagatgctgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatctt |
163 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| || || ||||| || |||||| | ||| || || |||||||| | ||| |||||||||||| |
|
|
| T |
8877344 |
atttatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatctt |
8877443 |
T |
|
| Q |
164 |
gaaaagctagtactcgcagattgtctgaggttg |
196 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |
|
|
| T |
8877444 |
gaaaagctagtactcaaagattgtccgaggttg |
8877476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 9498 - 9610
Alignment:
| Q |
137 |
ccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtctgaggttgtccgaggtttctcctagcattggagatctcaagaaaattc |
236 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||| ||| |||| || ||||| | ||| || | |||||||||| |||| | ||| ||| |
|
|
| T |
9498 |
ccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttc |
9597 |
T |
|
| Q |
237 |
ttctgattaattt |
249 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
9598 |
ttctgataaattt |
9610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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