View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10850_low_5 (Length: 239)
Name: NF10850_low_5
Description: NF10850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10850_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 5522949 - 5522740
Alignment:
| Q |
11 |
aagcaaaggtgaaacattgaagattaatctttggagattacataccatgctctcggactccatgtgcaaaactgtcaccctttcttccaaacatgttcat |
110 |
Q |
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| T |
5522949 |
aagcaaaggtgaaacattgaagattaatctttggagattacataccatgctcttggactccatgtgcaaaactgtcaccctttcttccaaacatgttcat |
5522850 |
T |
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| Q |
111 |
cttagtcagaactgaatttagtttacctgaaaatataaaaatgaccatgataaatgaaattagtttttaaaagaagtattcatgaattacagttttgtta |
210 |
Q |
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| T |
5522849 |
cttagtcagaactgaatttagtttacctgaaaatataaaaatgaccatgatcaatgaaattagtttttaaaagaagtattcatgaattacagttttgtta |
5522750 |
T |
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| Q |
211 |
atgtaggggt |
220 |
Q |
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|||||||||| |
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| T |
5522749 |
atgtaggggt |
5522740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 51753993 - 51754143
Alignment:
| Q |
11 |
aagcaaaggtgaaacattgaagattaatctttggagattacataccatgctctcggactccatgtgcaaaactgtcaccctttcttccaaacatgttcat |
110 |
Q |
| |
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||||||| |||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||| |
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| T |
51753993 |
aagcaaaagtgaaaaattgaagataggtcttccaagattacataccatgctctcggataccatgtgcaaaaccatcatcttttcttccaaacatgttcat |
51754092 |
T |
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| Q |
111 |
cttagtcagaactgaatttagtttacctgaaaatataaaaatgaccatgat |
161 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
51754093 |
cttagtcagaactgaatttaatttacctgaaaatagaaaaatgaccatgat |
51754143 |
T |
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