View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10850_low_8 (Length: 227)
Name: NF10850_low_8
Description: NF10850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10850_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17883435 - 17883209
Alignment:
| Q |
1 |
aggaaaatctagaacatgggatgtcgcaaataatgctacagttccacgagattgaagcatactttgagtgttcagcatataggccaatccaggtatcttt |
100 |
Q |
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| T |
17883435 |
aggaaaatctagaacatgggatgtcgcaaataatgctacagttccacgagattgaagcatactttgagtgttcagcatataggctaatccaggtatcttt |
17883336 |
T |
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| Q |
101 |
tatccatactattgcaatcaaattcctccttttttgaaataaatgctacaactatatctggattttgtttcatgcgattataattaaatttccttgttga |
200 |
Q |
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| T |
17883335 |
tatccatactattgcaatcaaattcctccttttttgaaataaatgctacaactatatctggattttgtttcatgcgattataattaaatttccttgttga |
17883236 |
T |
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| Q |
201 |
aggtccttgaagttttctactttgcac |
227 |
Q |
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| T |
17883235 |
aggtccttgaagttttctactttgcac |
17883209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 15017945 - 15017899
Alignment:
| Q |
181 |
taattaaatttccttgttgaaggtccttgaagttttctactttgcac |
227 |
Q |
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| T |
15017945 |
taattaagtttccttgttgaaggtccgggaagttttcttctttgcac |
15017899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 36873674 - 36873805
Alignment:
| Q |
9 |
ctagaacatgggatgtcgcaaataatgctacagttccacgagattgaagcatactttgagtgttcagcatataggccaatccaggtatcttttatccata |
108 |
Q |
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| T |
36873674 |
ctagaacaggtgatgtcgccaataatgcaacagttccgcgagattgaaacttgcatcgagtgttcggcatctaggcttatccaggtatctttcattcata |
36873773 |
T |
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| Q |
109 |
ctattgcaatcaaattcctccttttttgaaat |
140 |
Q |
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| T |
36873774 |
ctattgcaatgagattcctcctttgttgaaat |
36873805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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