View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10850_low_9 (Length: 222)
Name: NF10850_low_9
Description: NF10850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10850_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 1661039 - 1661231
Alignment:
| Q |
18 |
gttatataggtttatcccactaagcggagctgataaaaaatgtgattttatgttgacatattcaaattctaaaagtaaaaataggtcaagatatgtagga |
117 |
Q |
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| T |
1661039 |
gttatataggtttatcccacta-gcggagctgataaaaaatgtgattttatgttgacatattcaaattctaaaagtaaaaataggtcaagatatgtagga |
1661137 |
T |
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| Q |
118 |
gtaacttcagactttggtcattattcatcaagaatagaaataacatggcattaagaatcatagtcatagactcaaccatgctcaaccaccctat |
211 |
Q |
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| T |
1661138 |
gtaacttcagactttggtcattattcatcaagaatagaaataacatggcattaagaatcatagtcatagactcaaccatgctcaaccaccctat |
1661231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 19909915 - 19910065
Alignment:
| Q |
18 |
gttatataggtttatcccactaagcggagctgataaaaaatgt-gattttatgttgacatattcaaattctaaaagtaaaaataggtcaagatatgtagg |
116 |
Q |
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| T |
19909915 |
gttatataggtttatcccactaagtggagcttataaaaaaaattgattttatgttgacatattcaaatgctaaaagtaaaaataggtcaagacatataag |
19910014 |
T |
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| Q |
117 |
agtaacttcagactttggtcattattcatcaagaatagaaataacatggca |
167 |
Q |
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| T |
19910015 |
agtaactttagactttggtcattattcatcaagaatggaaataacatggca |
19910065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 19964237 - 19964051
Alignment:
| Q |
18 |
gttatataggtttatcccactaagcggagctgataaaaaatgtgattttatgttgacatattcaaattctaaaagtaaaaataggtcaagatatgtagga |
117 |
Q |
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| T |
19964237 |
gttatataggtttatcccactaag-ggagctgataaaaaatgtgattttatgttgacatattcaaatgctaagagtataaataggtcaagatatgtagga |
19964139 |
T |
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| Q |
118 |
gtaacttcagactttggtcattattcatcaagaatagaaataacatggcattaagaatcatagtcatagactcaaccatgctcaaccaccctat |
211 |
Q |
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| T |
19964138 |
gtaacttcagagttttgacattattcatcaaggatagaaataacatggcattaacaatcat-gt-----actcaaccatgctcaatcaccctat |
19964051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 52588903 - 52588836
Alignment:
| Q |
81 |
aaattctaaaagtaaaaataggtcaagatatgtaggagtaacttcagactttggtcattattcatcaa |
148 |
Q |
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|||| |||||||||||||||||| |||||||||| || || ||| |||||||| |||||||||||||| |
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| T |
52588903 |
aaatactaaaagtaaaaataggttaagatatgtaagaatagcttgagactttgatcattattcatcaa |
52588836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 24775105 - 24775041
Alignment:
| Q |
81 |
aaattctaaaagtaaaaataggtcaagatatgtaggagtaacttcagactttggtcattattcat |
145 |
Q |
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|||| |||||||||||||||||| |||||||||| || | ||| |||||||| ||||||||||| |
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| T |
24775105 |
aaatgctaaaagtaaaaataggttaagatatgtaagaagagcttgagactttgatcattattcat |
24775041 |
T |
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