View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10851_high_1 (Length: 501)
Name: NF10851_high_1
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 31201055 - 31200580
Alignment:
| Q |
17 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201055 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
31200956 |
T |
|
| Q |
117 |
gagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccaccctttt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200955 |
gagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccaccctttt |
31200856 |
T |
|
| Q |
217 |
aatcatcttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagtcattaacaattcataatgttatcatcttaaatcct |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
31200855 |
aatcattttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagtcatgaacaattcataatgttatcatcttaaatcat |
31200756 |
T |
|
| Q |
317 |
ttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgattaagtca |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31200755 |
ttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtgattaagtca |
31200656 |
T |
|
| Q |
417 |
taaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa |
492 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200655 |
tatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa |
31200580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 31189248 - 31188773
Alignment:
| Q |
17 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189248 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
31189149 |
T |
|
| Q |
117 |
gagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccaccctttt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189148 |
gagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttttaatcaaagttgataacctcttcaaatgaagacactctccaccctttt |
31189049 |
T |
|
| Q |
217 |
aatcatcttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagtcattaacaattcataatgttatcatcttaaatcct |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
31189048 |
aatcatcttgtgaagaaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagtcatgaacaattcataatgttatcatcttaaatcat |
31188949 |
T |
|
| Q |
317 |
ttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgattaagtca |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31188948 |
ttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtgattaagtca |
31188849 |
T |
|
| Q |
417 |
taaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa |
492 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188848 |
tatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa |
31188773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 31145190 - 31145073
Alignment:
| Q |
17 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||| |||||||||||||||||| |
|
|
| T |
31145190 |
acctacaatgagtaaagttattgaaatgttagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcctactaggtcaatatca |
31145091 |
T |
|
| Q |
117 |
gagtcttctaagtcttaa |
134 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31145090 |
gagtcttctaagtcttaa |
31145073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 30961397 - 30961551
Alignment:
| Q |
18 |
cctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatcag |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| ||||||| ||||| || |||||||| ||| |||||| |
|
|
| T |
30961397 |
cctacaatgagtaaagtagttgaaatgttagaagttaacatgaattcattggaaataccaccaaaaccattgctttcgtctcctactagatcattatcag |
30961496 |
T |
|
| Q |
118 |
agtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatc |
173 |
Q |
| |
|
|||||| | ||||||| |||||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
30961497 |
agtcttgcacgtcttaa-atttgacggtatgtaaaattgttatatactttttaatc |
30961551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 31145043 - 31144935
Alignment:
| Q |
140 |
gagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattagg |
239 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| | ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| || |
|
|
| T |
31145043 |
gagggtaagtataattgttatatatattttaaacagagtggataaccacttcaaatgataacaatctccacccttttaatcatcttgtgaagctattggg |
31144944 |
T |
|
| Q |
240 |
ttcaagtgt |
248 |
Q |
| |
|
|| |||||| |
|
|
| T |
31144943 |
tttaagtgt |
31144935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
336 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
410 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 31171503 - 31171395
Alignment:
| Q |
17 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||| | ||| || || ||||| ||| ||||| |
|
|
| T |
31171503 |
acctacaatgagtaaagtgattgaaatgttagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcccactagatcagtatca |
31171404 |
T |
|
| Q |
117 |
gagtcttct |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
31171403 |
gagtcttct |
31171395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 30992878 - 30993038
Alignment:
| Q |
17 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatca |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||| | ||||||||||| ||||||| ||||| || |||||||| ||| ||||| |
|
|
| T |
30992878 |
acctacaatgagtaaagtagttgaaatgttagaagttgacattaattcgttggaaataccaccaaaaccattgctttcgtctcctactagatcagtatca |
30992977 |
T |
|
| Q |
117 |
gagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagt |
178 |
Q |
| |
|
||||||| | |||||| ||||||| || ||||||||||| |||| |||| |||||||| |
|
|
| T |
30992978 |
gagtcttgcacttcttaa-atttgagaatatgtataattgttgtatacttttttatcagagt |
30993038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 31224902 - 31225039
Alignment:
| Q |
18 |
cctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaatatcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| | ||||| ||||| ||||||| |||||||| || ||||| || |||||| |
|
|
| T |
31224902 |
cctacaatgagtaaagtgattgaaatgttagatgttagcatgaattcgttggaaatgccaccaaaaccattgctttcttctccgactagatctgtatcag |
31225001 |
T |
|
| Q |
118 |
agtcttctaagtcttaatatttgagggtaagtataatt |
155 |
Q |
| |
|
||||||| | ||| ||| || |||||||| || ||||| |
|
|
| T |
31225002 |
agtcttccacgtcctaaaatctgagggtatgtgtaatt |
31225039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 294 - 393
Target Start/End: Complemental strand, 31144869 - 31144770
Alignment:
| Q |
294 |
ataatgttatcatcttaa-atcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagt |
392 |
Q |
| |
|
|||||||||||||||| | | |||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31144869 |
ataatgttatcatctttataacctttagaagtttgttgctgcatatgctac-aatggagaacatgttatactagaaaatatttttatcttatttggaagt |
31144771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 30955652 - 30955737
Alignment:
| Q |
21 |
acaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
106 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| || ||||||| | |||||||||||||| ||||| | ||||||| |||||||| |
|
|
| T |
30955652 |
acaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactag |
30955737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 30945392 - 30945456
Alignment:
| Q |
21 |
acaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaacc |
85 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| || ||||||| | |||||||||||||| ||||| |
|
|
| T |
30945392 |
acaatgagtagagtgattgaaatgttggaaggtagcatgaatatccttgaaataccaccaaaacc |
30945456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 31171394 - 31171328
Alignment:
| Q |
182 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgt |
248 |
Q |
| |
|
|||||| |||||||||||||| |||||| || ||||||| |||||| |||||||| |||||||||| |
|
|
| T |
31171394 |
taaccttttcaaatgaagacaatctccatccctttaatcttcttgttaagcaattgagttcaagtgt |
31171328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 31230185 - 31230270
Alignment:
| Q |
21 |
acaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||||| | ||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
31230185 |
acaatgagtagagtgattgaaatgttagaaggcaacaagaattgtttggaaataccaccaaaacctattctttcttctcctactag |
31230270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 31225168 - 31225277
Alignment:
| Q |
289 |
aattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtgg |
388 |
Q |
| |
|
|||| ||||| ||| |||| || |||||||| ||||||| |||| || ||||| |||| | |||||||||||||| |||| | |||||||||||||| |
|
|
| T |
31225168 |
aatttataattttaacatcatatatcctttataagttggcgactgcataagctacaaatgaaaaacaagctatactacaaaa--agtttatcttatgtgg |
31225265 |
T |
|
| Q |
389 |
aagtaactagta |
400 |
Q |
| |
|
||| |||||||| |
|
|
| T |
31225266 |
aagcaactagta |
31225277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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