View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10851_low_2 (Length: 304)
Name: NF10851_low_2
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 48814099 - 48814293
Alignment:
| Q |
18 |
gttctaacatttgtaagttgtatttacaaactttcctatagttgctcaatcgataatcatgacaatatcataactttccactttagtagatcatgctcaa |
117 |
Q |
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| T |
48814099 |
gttctaacatctgtaagttgtatttacaaactttcctatagttgctcaatcgataatcatgacaatatcataactttccactttagtagatcatgctcaa |
48814198 |
T |
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| Q |
118 |
ccataaaaacaaatagtgcagtttatcaaggaatagtagcaacacgaaggcacggtagtcagtaaagcaaaaatcaactcgcaaaataaacctgc |
212 |
Q |
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| T |
48814199 |
ccataaaaacaaatagtgcagtttatcaaggaatagtagcaacacgaaggcacggtagtcagtaaagcaaaaatcaactcgcaaaataaacctgc |
48814293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 48797435 - 48797540
Alignment:
| Q |
49 |
tttcctatagttgctcaatcgat---aatcatgacaatatcataactttccactt---tagtagatcatgctcaaccataaaaacaaatagtgcagttta |
142 |
Q |
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| T |
48797435 |
tttcctatggttgctcaaccgatcataatcatgtcaatatcatacctttccactttagtagtagatcactcccaacaataaaaacagatagtgcagttta |
48797534 |
T |
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| Q |
143 |
tcaagg |
148 |
Q |
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| T |
48797535 |
tcaagg |
48797540 |
T |
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