View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10851_low_21 (Length: 201)
Name: NF10851_low_21
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 3e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 43447017 - 43446861
Alignment:
| Q |
10 |
agaagcaaaggtgagtaaaacaaattttataaatttgatttgatgatttcttcaaatgttttacgatgctatgttgttgttgatgaattacttggattgt |
109 |
Q |
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| T |
43447017 |
agaagctagggtgagtaaaacaagttttttaaatttgatttgatgatttcttcaaatgttttacgatgctatgttgttgtt-atgaattacttggattgt |
43446919 |
T |
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| Q |
110 |
actatttgatcttttattgtcgtttctaattatttctcacggaaaaccaatggcagca |
167 |
Q |
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| T |
43446918 |
actatttgatctcttatcgtcgtttctaattatttctcacggaaaaccaatggcagca |
43446861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 43440239 - 43440053
Alignment:
| Q |
10 |
agaagcaaaggtgagtaaaacaaattttataaatttgatttgatgatttcttcaaatgttttacgatgctatgttgttgttgatgaattacttggattgt |
109 |
Q |
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| T |
43440239 |
agaagctagggtgagtaagacaagttttttaaatttaatttgatgattt--tcaaatgttttatgatgctatgctattgttgatgaattagttggattgt |
43440142 |
T |
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| Q |
110 |
actatttgatcttttat---------------tgtcgtttctaattatttctcacggaaaaccaatggcagcattgagtgctccacttt |
183 |
Q |
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| T |
43440141 |
actatttgatctcttattgtcattttttataatgtcatttctaattatgtctcagggaaaaccaatggcagcattgagtgctccacttt |
43440053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 43450020 - 43449899
Alignment:
| Q |
7 |
agaagaagcaaaggtgagtaaaacaaattttataaatttgatttgatgatttcttcaaatgttttacgatgctatgttgttgttgatgaattacttggat |
106 |
Q |
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| T |
43450020 |
agaagaagctagggtgagtaaaaccaagtttttaaatttgatttgatgattt--tcaaatgttttatgatgttatgctattgttaataaattacttggat |
43449923 |
T |
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| Q |
107 |
tgtactatttgatcttttattgtc |
130 |
Q |
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| T |
43449922 |
tgtactatttgatctcttattgtc |
43449899 |
T |
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