View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10851_low_3 (Length: 296)
Name: NF10851_low_3
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_3 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 31630039 - 31629758
Alignment:
| Q |
15 |
aatggcaatctaaacaaggaaaacaagatttataatattcaacactgaacttagagggaacttgctaaagaatttttggtcgnnnnnnnnnnnnnctaac |
114 |
Q |
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| T |
31630039 |
aatggcaatctaaacaaggcaaacaagatttataatattcaacactgaacttagagggaacttgctaaataatttttggttgaaaaataaaaaaactaac |
31629940 |
T |
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| Q |
115 |
ctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctttgtct |
214 |
Q |
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| T |
31629939 |
ctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctttgtct |
31629840 |
T |
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| Q |
215 |
gcttagatcaatcagataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattagggaattaacc |
296 |
Q |
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| T |
31629839 |
gcttagatcaatcagataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattagggaattaacc |
31629758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 31646124 - 31646008
Alignment:
| Q |
110 |
ctaacctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctt |
209 |
Q |
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| T |
31646124 |
ctaacctgttgtccacactctttcccgtttcatcgtcaaca---gtcgatttatgcatactaggcttggctatattgattagatgttcacattcctcttt |
31646028 |
T |
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| Q |
210 |
tgtctgcttagatcaatcag |
229 |
Q |
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| T |
31646027 |
tgtctgcttagatcaatcag |
31646008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 296
Target Start/End: Complemental strand, 31651522 - 31651360
Alignment:
| Q |
130 |
tttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctttgtctgcttagatcaatcag |
229 |
Q |
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||||||||||| | |||| ||||| ||||| |||||||| ||||| ||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
31651522 |
tttcctgtttcctcgtcaataacagccgatttatgcatactaggctttgctatattgattagatgttcacattcctcttttgtctgctcagatcaatcag |
31651423 |
T |
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| Q |
230 |
ataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattagggaattaacc |
296 |
Q |
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| T |
31651422 |
ct-tagcctta-gcatttaggaaatggaa-atttgtaacattaaaactatat-ttaggggattaacc |
31651360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 31656269 - 31656156
Alignment:
| Q |
157 |
gatttttgcatacttggcttggctgtattgattagatgttcacattccttctttgtctgcttagatcaatcagataaagccttaggcatttgggaaatgg |
256 |
Q |
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||||| |||||||| ||||| ||| |||||||||||||||| ||||||| |||||||||| ||||||||||| | ||||||| |||||| |||||||| |
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| T |
31656269 |
gatttatgcatactaggctttgctatattgattagatgttcgcattcctcttttgtctgctcagatcaatcag-tttagcctta-gcatttaggaaatgg |
31656172 |
T |
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| Q |
257 |
aagcattgtaacattaa |
273 |
Q |
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| T |
31656171 |
aaac-ttgtaacattaa |
31656156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 31637210 - 31637098
Alignment:
| Q |
110 |
ctaacctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctt |
209 |
Q |
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|||||||||||| | ||||||||||||| || ||||||||||| ||||| |||| | ||||||||| |||||||||||||||||||||||| || |
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| T |
31637210 |
ctaacctgctgttcacactctttcctgttgtatcatcaacaacagtcgatttctgcacatcaggcttggctatattgattagatgttcacattcctcttt |
31637111 |
T |
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| Q |
210 |
tgtctgcttagat |
222 |
Q |
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| T |
31637110 |
tgcctgctaagat |
31637098 |
T |
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