View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10851_low_4 (Length: 290)
Name: NF10851_low_4
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 31966491 - 31966230
Alignment:
| Q |
17 |
atcatgcaactatttttacaacgtaatgtcattcaaccataggaatacatgtgaaacctaccaaataatgaa-caaggtttccaaagaaaaaattgtcga |
115 |
Q |
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| T |
31966491 |
atcatgcaactatttttacaacgtaatgtcattcaaccataggaatacatgtgaaacctaccaaataatgaaacaaggtttccaaagaaaaaattgacga |
31966392 |
T |
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| Q |
116 |
catcctctaaagtctatatggatgatatgatgataaaatccaaaaaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaagtac |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966391 |
catcctctaa-gtctatatggatgatatgatgataaaatccaaacaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaagtac |
31966293 |
T |
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| Q |
216 |
aacatgagacttaacccatataaatataagtgcacatttgatgtacgagaaggtaagttccta |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966292 |
aacatgagacttaacccatataaatataagtgcacatttgatgtacgagaaggtaagttccta |
31966230 |
T |
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