View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10851_low_6 (Length: 278)
Name: NF10851_low_6
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 13457469 - 13457711
Alignment:
| Q |
17 |
aaaagttaatttgaatattgaatccatgtatagattgaacagcagtaatctaatcaggcatttatccttataattcagattcaaatccaatattccaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13457469 |
aaaagttaatttgaatattgaatccatgtatagattgaacagcagtaatctaatcaggcatttatccttataattcagattcaaatccaatattccaaaa |
13457568 |
T |
|
| Q |
117 |
tccttccggagtcaaaggaggaacatacttataacgatgcctagaaacaccatcatgatgctcacaacgactattttgcttattgctatcggggtcctta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13457569 |
tccttccggagtcaaaggaggaacatacttataacgatgcctagaaacaccatcatgatgctcacaacgactattttgcttattgctatcggggtcctta |
13457668 |
T |
|
| Q |
217 |
ccatcagcattaggaagaacagcttcatagaacttcctacatt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13457669 |
ccatcagcattaggaagaacagcttcatagaacttcctacatt |
13457711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University