View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10851_low_7 (Length: 278)
Name: NF10851_low_7
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 1841567 - 1841487
Alignment:
| Q |
182 |
ctgaattatgccagaaaatgcttcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaat |
262 |
Q |
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| T |
1841567 |
ctgaattatgccagaaaatgcttcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaat |
1841487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 6472764 - 6472553
Alignment:
| Q |
13 |
agatgaagaggatgtgccaacattgttaaatcacctgaaacttgcttctcaaacttatactcaacac-aaatggttctccaaatatagcaacacctgaca |
111 |
Q |
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| T |
6472764 |
agatgaagagggtgtgctaacatcagtaaatcacctgaacctttcttctcaaacttatactcaacactaaacggttctttgagcatagcttcacctgaca |
6472665 |
T |
|
| Q |
112 |
cagggtaacaagaactaaacccgtcacgaacagcttcgtttgttggtctaaaatccagcaacaaagccatctgaattatgccagaaaatgcttcagaagt |
211 |
Q |
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| T |
6472664 |
aagggtaacaagaactgtacttatcaaggacatcttcgttttttgaattggaatccggcaacaaagctatccgaatcatgccggaaaaggcctcagaagt |
6472565 |
T |
|
| Q |
212 |
gatctcagaaag |
223 |
Q |
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| T |
6472564 |
gatctcagaaag |
6472553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 6505937 - 6506080
Alignment:
| Q |
10 |
tgaagatgaagaggatgtgccaacattgttaaatcacctgaaacttgcttctcaaacttatactcaacac-aaatggttctccaaatatagcaacacctg |
108 |
Q |
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| T |
6505937 |
tgaagatgaagagggtgtgctaataataacaaatcacctgaaacattcttctcaaacttatactcaacacaaaatggttctctgagtttagcattacctg |
6506036 |
T |
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| Q |
109 |
acacagggtaacaagaactaaacccgtcacgaacagcttcgttt |
152 |
Q |
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| T |
6506037 |
ctaaagggtgacaagaactaaatctgtcaagaacagcttcgttt |
6506080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 6515825 - 6515702
Alignment:
| Q |
10 |
tgaagatgaagaggatgtgccaacattgttaaatcacctgaaacttgcttctcaaacttatactcaacacaaatggtt-ctccaaatatagcaacacctg |
108 |
Q |
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|||| ||||||||| ||||| |||| | |||||||||||| ||| |||||||||||||||||||| ||||| ||| | | || | ||||| |||||| |
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| T |
6515825 |
tgaatatgaagagggtgtgctaacaataacaaatcacctgaacctttcttctcaaacttatactcaagacaaaacgtttcactaagtttagcatcacctg |
6515726 |
T |
|
| Q |
109 |
acacagggtaacaagaactaaacc |
132 |
Q |
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| | |||||||||||||||||||| |
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| T |
6515725 |
ataaagggtaacaagaactaaacc |
6515702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 1841611 - 1841577
Alignment:
| Q |
6 |
gagatgaagatgaagaggatgtgccaacattgtta |
40 |
Q |
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| T |
1841611 |
gagatgaagatgaagaggatgtgccaacattgtta |
1841577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 1837512 - 1837455
Alignment:
| Q |
91 |
caaatatagcaacacctgacacagggtaacaagaactaaacccgtcacgaacagcttc |
148 |
Q |
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| T |
1837512 |
caaacatagcaacaactgacaaagggtaacaagaactaaacctgtcaagaacaacttc |
1837455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 13035462 - 13035398
Alignment:
| Q |
13 |
agatgaagaggatgtgccaacattgttaaatcacctgaaacttgcttctcaaacttatactcaac |
77 |
Q |
| |
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| T |
13035462 |
agatgaagagggtgtgctaacatcagtaaatcacctgaacctttcttattaaacttatactcaac |
13035398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 9664929 - 9664811
Alignment:
| Q |
104 |
acctgacacagggtaacaagaactaaacccgtcacgaacagcttcgtttgttggtctaaaatccagcaacaaagccatctgaattatgccagaaaatgct |
203 |
Q |
| |
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|||||| | ||||||||||| |||||| |||| |||||||||| ||| ||| | ||||| |||||||||| ||| ||||| ||| |||||||| |
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| T |
9664929 |
acctgataaagggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaattacaccacaaaatgct |
9664830 |
T |
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| Q |
204 |
tcagaagtgatctcagaaa |
222 |
Q |
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| T |
9664829 |
tcagaagtgatctcagaaa |
9664811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 13535953 - 13535835
Alignment:
| Q |
104 |
acctgacacagggtaacaagaactaaacccgtcacgaacagcttcgtttgttggtctaaaatccagcaacaaagccatctgaattatgccagaaaatgct |
203 |
Q |
| |
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|||||| | ||||||||||| |||||| |||| |||||||||| ||| ||| | ||||| |||||||||| ||| ||||| ||| |||||||| |
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| T |
13535953 |
acctgataaagggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaattacaccacaaaatgct |
13535854 |
T |
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| Q |
204 |
tcagaagtgatctcagaaa |
222 |
Q |
| |
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||||||||||||||||||| |
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| T |
13535853 |
tcagaagtgatctcagaaa |
13535835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 49569924 - 49569972
Alignment:
| Q |
173 |
caaagccatctgaattatgccagaaaatgcttcagaagtgatctcagaa |
221 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
49569924 |
caaagctatctgaattatgcaggaaaatggttcagaagtgatctcagaa |
49569972 |
T |
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