View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10851_low_9 (Length: 250)
Name: NF10851_low_9
Description: NF10851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10851_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 13457918 - 13458152
Alignment:
| Q |
5 |
tccttatttaaattatctctaatattttcaagaggagtatcaagaaagtcatcatgaaggtcattgcctgctcgactttgatgagaccgggtttgcctcc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13457918 |
tccttatttaaattatctctaatattttcaagaggagtatcaagaaagtcatcatgaaggtcattgcctgctcgactttgatgagaccgggtttgcctcc |
13458017 |
T |
|
| Q |
105 |
aggaaggtgcaggccgctttgtaccagacacagaagctaattttgtactgggtggacatttttggacaccatggaaaccggaagaggaagaaggagctcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13458018 |
aggaaggtgcaggccgctttgtaccagacacagaagctaattttgtactgggtggacatttttggacaccatggaaaccggaagaggaagaaggagctcc |
13458117 |
T |
|
| Q |
205 |
tttgtcatcctccaatgccttctccttcacttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13458118 |
tttgtcatcctccaatgccttctccttcacttcat |
13458152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University