View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10852_low_1 (Length: 591)
Name: NF10852_low_1
Description: NF10852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10852_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 22226957 - 22226592
Alignment:
| Q |
1 |
ggaaagaaagaagcttgaacttgagttcctccaaacctttgagaagcaaattcagaattgagaatcaaaaccagcaaaacaaaagaggagcaacaaccaa |
100 |
Q |
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| T |
22226957 |
ggaaagaaagaagcttgaacttgagttcctccaaacctttgagaagcaaattcagaattgagaatcaaaaccagcaaaacacaagaggagcaaaaaccaa |
22226858 |
T |
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| Q |
101 |
aacctaataacctctcaaaattgaaacttgcaagtgatatactaatatacctaaattctccaagcttataaaaactagcaaaaataatcaaaaaggtcac |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22226857 |
aacctaattacctctcaaaattgaaacttgcaagtgatatactaatatacctaaattctccaagcttataaaaactagcaaaaataatcaaaagggtcac |
22226758 |
T |
|
| Q |
201 |
agaaaatatcatcagattccaataaagc-tacaaactttaattatttgctcaaaacagaaatacttccacagaatccaagag---------aggaaaaaa |
290 |
Q |
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| T |
22226757 |
aaaaaatatcatcagattccaataaagcgtacaaactttaattatttgctcaaaacagaaacacttccacagaatccaagagagaaaaaacaggaaaaaa |
22226658 |
T |
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| Q |
291 |
gcataagcacaataacctatgctatatatgacacaattccaacacaaacccactttaaattcctca |
356 |
Q |
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| T |
22226657 |
gcaaaagcacaataacctatgctatatatgacacaattccaacacaaacccactttaaattcctca |
22226592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 22226517 - 22226372
Alignment:
| Q |
431 |
taaataaatctgcaaagtgcatatacatgttgctgaaacagaacatgttatgcttttttacctgaactttggttgtttc-aaagtcaaagt--nnnnnnn |
527 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22226517 |
taaataaatctgcaaagtgcatatacatgttactgaaacagaacatgctatgcttttttacctgaactttggttgtttcaaaagtcaaagttgtgtgtgt |
22226418 |
T |
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| Q |
528 |
nnnnngctcaaagacagaatcagaggatgacccaggtgattgaacc |
573 |
Q |
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| T |
22226417 |
gtgtggctcaaagacagaatcagaggatgacccaggtgattgaacc |
22226372 |
T |
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