View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10852_low_7 (Length: 250)
Name: NF10852_low_7
Description: NF10852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10852_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14221054 - 14221297
Alignment:
| Q |
1 |
cactcttgcaaataacccaaatatatgcaaaccaaataacgttaaatctcttattcagaccctaccacatcctataagacctgcaaactggttatgattt |
100 |
Q |
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| T |
14221054 |
cactgttgcaaataacccaaatatatgcgaaccaaataacgctaaatctcttattcagaccctaccacatcctataagacctgcaaactggttatgattt |
14221153 |
T |
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| Q |
101 |
atcaaggccacaataaaatctgcaaactggcgatgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaatca |
200 |
Q |
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| T |
14221154 |
atcaaggccacaataaaatctgcaaactggcgatgtgggactaaagacgagtgacgtgtgaaacttttgtcaccactcgccaaattcagttccaaaatca |
14221253 |
T |
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| Q |
201 |
ttgttacacacatccaatgcacacattcgttctgtctctgctcc |
244 |
Q |
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| T |
14221254 |
ttgttacacacatccaatgcacacattcgttctgtctcttctcc |
14221297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 14229378 - 14229471
Alignment:
| Q |
130 |
gcgatgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaatcattgttacacacatccaatgcaca |
223 |
Q |
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| T |
14229378 |
gcgatgtgggactaaatatgagtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcaca |
14229471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 14226561 - 14226659
Alignment:
| Q |
128 |
tggcgatgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaatcattgttacacacatccaatgcacacat |
226 |
Q |
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| T |
14226561 |
tggcgatgtgggactaattatgagtgacttttgaaactttagtcaccactcgccaaattcagctcaaaaatcattgttatacacatccactgcacacat |
14226659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 14225854 - 14225933
Alignment:
| Q |
30 |
aaccaaataacgttaaatctct-tattcagaccctaccacatcctataagacctgcaaactggttatgatttatcaaggc |
108 |
Q |
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||||||||||| |||| |||| |||| ||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| |
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| T |
14225854 |
aaccaaataacactaaagctctctatttagaccctaccacagcctattagacccgcaaactggttaagatttatcaaggc |
14225933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 14223852 - 14223917
Alignment:
| Q |
133 |
atgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaat |
198 |
Q |
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| T |
14223852 |
atgtgggactaaatataagtgaattgtgaaactttagtcaccactcgccaaattcagtttcaaaat |
14223917 |
T |
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