View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10852_low_8 (Length: 214)

Name: NF10852_low_8
Description: NF10852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10852_low_8
NF10852_low_8
[»] chr5 (7 HSPs)
chr5 (1-198)||(38816742-38816932)
chr5 (1-63)||(19820441-19820503)
chr5 (1-63)||(22013364-22013426)
chr5 (9-63)||(42469171-42469225)
chr5 (1-38)||(15410495-15410532)
chr5 (1-41)||(21522722-21522762)
chr5 (1-41)||(21533288-21533328)
[»] chr7 (3 HSPs)
chr7 (1-63)||(27944991-27945053)
chr7 (1-63)||(24105629-24105690)
chr7 (3-41)||(11722147-11722185)
[»] chr2 (5 HSPs)
chr2 (1-63)||(33519736-33519798)
chr2 (1-63)||(20539721-20539783)
chr2 (9-63)||(19536453-19536507)
chr2 (1-63)||(21782865-21782927)
chr2 (1-62)||(21624217-21624278)
[»] chr6 (8 HSPs)
chr6 (1-48)||(9027143-9027190)
chr6 (9-63)||(853914-853968)
chr6 (9-63)||(8365574-8365628)
chr6 (1-61)||(12696277-12696336)
chr6 (1-48)||(5000673-5000720)
chr6 (1-63)||(3398569-3398631)
chr6 (1-38)||(9658854-9658891)
chr6 (1-41)||(10294079-10294119)
[»] chr8 (5 HSPs)
chr8 (1-63)||(25192394-25192456)
chr8 (1-63)||(126396-126457)
chr8 (1-46)||(29510351-29510396)
chr8 (1-41)||(22651948-22651988)
chr8 (1-41)||(27213519-27213559)
[»] chr1 (7 HSPs)
chr1 (1-48)||(40917716-40917763)
chr1 (1-47)||(398812-398858)
chr1 (1-64)||(5376547-5376609)
chr1 (1-40)||(6427323-6427362)
chr1 (9-63)||(39130822-39130876)
chr1 (9-50)||(48040517-48040558)
chr1 (3-63)||(34315663-34315722)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-63)||(20122-20184)
[»] chr3 (4 HSPs)
chr3 (1-63)||(8842280-8842342)
chr3 (1-63)||(8383207-8383269)
chr3 (9-62)||(8587076-8587129)
chr3 (9-54)||(10335341-10335386)
[»] scaffold0306 (1 HSPs)
scaffold0306 (9-64)||(13349-13404)
[»] scaffold0152 (1 HSPs)
scaffold0152 (9-64)||(21923-21978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-48)||(8763-8810)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-48)||(241559-241606)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38816742 - 38816932
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatggttaccgttcaattattctattttctcaaat 100  Q
    ||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816742 tattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaattattctattttctcaaat 38816834  T
Q  101 tattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816835 tattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19820441 - 19820503
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  19820441 tattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22013426 - 22013364
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  22013426 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 42469225 - 42469171
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||||||||||| |||||||| ||||| ||| |||||| | ||||||||||||    
T  42469225 gtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15410495 - 15410532
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtc 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  15410495 tattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21522762 - 21522722
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 41  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  21522762 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21533328 - 21533288
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 41  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  21533328 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27945053 - 27944991
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  27945053 tattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24105690 - 24105629
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||||||||||||| |||||| |||||||| | ||||||| ||||||||||||    
T  24105690 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 11722147 - 11722185
Alignment:
Q  3 ttagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 41  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  11722147 ttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33519798 - 33519736
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||||||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  33519798 tattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20539721 - 20539783
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||| ||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  20539721 tattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 19536453 - 19536507
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  19536453 gtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21782865 - 21782927
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||||||||||||| |  ||| ||||||| | ||| |||||||||||||||||    
T  21782865 tattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtattcgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21624278 - 21624217
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 62  Q
    ||||||| |||||||||||||||| || ||| ||||| ||| |||||||| || ||||||||    
T  21624278 tattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9027190 - 9027143
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 48  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  9027190 tattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 853914 - 853968
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  853914 gtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 8365574 - 8365628
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||||||||||||| |||||| |||||| || |||||||| ||||||||||||    
T  8365574 gtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12696336 - 12696277
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcat 61  Q
    ||||||| |||||||||||||||| |||||| ||||||| | |||||||| ||||||||||    
T  12696336 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5000673 - 5000720
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 48  Q
    |||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  5000673 tattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3398631 - 3398569
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||||||||||||| |||||| ||||| ||  |||||||| | ||||||||||    
T  3398631 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9658891 - 9658854
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtc 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  9658891 tattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10294119 - 10294079
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 41  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  10294119 tattagcggtatcggcatgtcagtatccgtgtcgtgtccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25192394 - 25192456
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||||||||||||| |||||  ||||||||  |||||||||||||||||||||    
T  25192394 tattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 126396 - 126457
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||||||||| |||||||||||||||||  ||||||| | || ||||| ||||||||||||    
T  126396 tattagcggtgttggcgtgtcagtatccgtatcgtgtcc-gtgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29510351 - 29510396
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 46  Q
    ||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  29510351 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22651988 - 22651948
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 41  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  22651988 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27213559 - 27213519
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 41  Q
    ||||||| ||||||||||||| ||||||||| |||||||||    
T  27213559 tattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40917763 - 40917716
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 48  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  40917763 tattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 398812 - 398858
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccg 47  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||||    
T  398812 tattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5376547 - 5376609
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 64  Q
    |||||||||||||||||||| ||| |||||| |||||||||| || |||| ||||| |||||||    
T  5376547 tattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga-tctgtatacgtgcctcatagt 5376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6427362 - 6427323
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 40  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  6427362 tattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 39130822 - 39130876
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||    
T  39130822 gtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 48040517 - 48040558
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 50  Q
    |||||||||||||||| |||||| ||||||||| ||||||||    
T  48040517 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 34315722 - 34315663
Alignment:
Q  3 ttagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||| |||||||| |||||||||||||| |||||||  | ||||||| ||||||||||||    
T  34315722 ttagctgtgtcggcatgtcagtatccgtgtcgtgtccata-tccgtatccgtgcttcatag 34315663  T

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Target: scaffold0223 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20184 - 20122
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    ||||||| |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  20184 tattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8842342 - 8842280
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||||||||||||| ||||| | |||||| ||| ||||| |||||||| ||||||||||||    
T  8842342 tattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8383269 - 8383207
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 63  Q
    |||||||||||||||||||||| | |||||| ||||||| | |||||| | |||||| |||||    
T  8383269 tattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgctacatag 8383207  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 8587076 - 8587129
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 62  Q
    |||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||    
T  8587076 gtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 10335341 - 10335386
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 54  Q
    |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  10335341 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

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Target: scaffold0306 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 13404 - 13349
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 64  Q
    |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  13404 gtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

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Target: scaffold0152 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 21923 - 21978
Alignment:
Q  9 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 64  Q
    |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  21923 gtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8810 - 8763
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 48  Q
    ||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  8810 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 241606 - 241559
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 48  Q
    ||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  241606 tattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 241559  T

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