View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10853_12 (Length: 306)
Name: NF10853_12
Description: NF10853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10853_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 1758067 - 1758341
Alignment:
| Q |
12 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758067 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
1758166 |
T |
|
| Q |
112 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758167 |
ttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
1758266 |
T |
|
| Q |
212 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758267 |
ctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcaggagatgtat |
1758341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 286
Target Start/End: Complemental strand, 29568536 - 29568276
Alignment:
| Q |
26 |
tcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaat |
125 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
29568536 |
tcatcatcacactcacaaaaactctttcaaacgccattcaccatcatcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaat |
29568437 |
T |
|
| Q |
126 |
ctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcacctcgccagatcaat |
225 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
29568436 |
ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaat |
29568337 |
T |
|
| Q |
226 |
ccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
29568336 |
ccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagatgtat |
29568276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 29168171 - 29168448
Alignment:
| Q |
12 |
acatcatcaatgcttcatcatca---ctctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcatt |
108 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||| ||| ||||||| |
|
|
| T |
29168171 |
acatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatcttctgctcaccaactatcatccaataagcatt |
29168270 |
T |
|
| Q |
109 |
cttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatg |
208 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29168271 |
ctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaatgctcttagctgctgtgtctctgatccatg |
29168370 |
T |
|
| Q |
209 |
cacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
29168371 |
caccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagatgtat |
29168448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 32 - 286
Target Start/End: Original strand, 29425232 - 29425489
Alignment:
| Q |
32 |
tcactctcacaaaaactctgtcaaacgctgttcacc---atcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctc |
128 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29425232 |
tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc |
29425331 |
T |
|
| Q |
129 |
acccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcacctcgccagatcaatcca |
228 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
29425332 |
atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctgatccatgcaccttgccgaatcaatcca |
29425431 |
T |
|
| Q |
229 |
ttccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
29425432 |
tgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagtagatgtat |
29425489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 27918583 - 27918843
Alignment:
| Q |
26 |
tcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaat |
125 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||| || |||||||||| |
|
|
| T |
27918583 |
tcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaat |
27918682 |
T |
|
| Q |
126 |
ctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcacctcgccagatcaat |
225 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| | ||||||| || ||||||||||| | ||||||||||| |
|
|
| T |
27918683 |
ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctcttcactgctgtgtatccgatccatgcactttgccagatcaat |
27918782 |
T |
|
| Q |
226 |
ccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
27918783 |
ccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtat |
27918843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 29569866 - 29569708
Alignment:
| Q |
27 |
catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatc |
126 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
29569866 |
catcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatc |
29569767 |
T |
|
| Q |
127 |
tcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctctt |
185 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
29569766 |
tcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgctctt |
29569708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 38157354 - 38157461
Alignment:
| Q |
177 |
aatgctcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatca |
276 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||| || ||| ||||||||||| ||||| |||||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
38157354 |
aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca |
38157451 |
T |
|
| Q |
277 |
ggagatgtat |
286 |
Q |
| |
|
|||||||||| |
|
|
| T |
38157452 |
ggagatgtat |
38157461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 27521516 - 27521242
Alignment:
| Q |
12 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
27521516 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgcccaccaaccatcatccaagaagcattctt |
27521417 |
T |
|
| Q |
112 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27521416 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccttgcac |
27521317 |
T |
|
| Q |
212 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
27521316 |
cttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcagcagatgtat |
27521242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 18986019 - 18986293
Alignment:
| Q |
12 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
18986019 |
acatcatcaatgcttcatcatcaccctcacaacaacactgtcaaactctgttcaccatcatcatcatctgctcaccaaccgtcatccaagaagcattctt |
18986118 |
T |
|
| Q |
112 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18986119 |
ttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtgggaatactcttagccgctgtgtctctgatccatgcac |
18986218 |
T |
|
| Q |
212 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986219 |
cttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
18986293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 27461919 - 27462193
Alignment:
| Q |
12 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27461919 |
acatcatcaatgcttcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattctt |
27462018 |
T |
|
| Q |
112 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27462019 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgctcttagccgctgtgtctctgatccatgcac |
27462118 |
T |
|
| Q |
212 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
|| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
27462119 |
ctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagatgtat |
27462193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 27482058 - 27482332
Alignment:
| Q |
12 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
111 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27482058 |
acatcatcaatgcctcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattctt |
27482157 |
T |
|
| Q |
112 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482158 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
27482257 |
T |
|
| Q |
212 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
|| || ||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
27482258 |
ctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagatgtat |
27482332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 25518400 - 25518677
Alignment:
| Q |
12 |
acatcatcaatgctt---catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcatt |
108 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
25518400 |
acatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctcctcaccaaccatcatccaagaagcatt |
25518499 |
T |
|
| Q |
109 |
cttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatg |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||| || |||||||| |||||||||| |
|
|
| T |
25518500 |
ctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaatgctcttcgctgctgtgtcgctgatccatg |
25518599 |
T |
|
| Q |
209 |
cacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
286 |
Q |
| |
|
||||| ||| |||||| | || ||||| |||||| ||| |||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
25518600 |
caccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatcaggagatgtat |
25518677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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