View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10853_4 (Length: 372)
Name: NF10853_4
Description: NF10853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10853_4 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 117 - 360
Target Start/End: Complemental strand, 42524509 - 42524266
Alignment:
| Q |
117 |
taattgaaagaaaaatcaagtgattgaatttatatatataaaattattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaatt |
216 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42524509 |
taattgaaagaaaaatcaactaattgaatttatatatataaaatttttgtcatacagcagaggaattcgtagtaaatgaatttgagccatatgccaaatt |
42524410 |
T |
|
| Q |
217 |
ccttagaacagtactttacaattagctaagctatgaaggtgataaaataacaaatcttgtgtgttcaacatctcatctacatggttgctttcatgcccaa |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
42524409 |
ccttagaacagtactttacaactagctaagctatgaaggtaataaaataacaaatcttgtgtgttcatcctctcatctacatggttgctttcatgcccaa |
42524310 |
T |
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| Q |
317 |
cgaagtttttccagttatgcaatggattcgagcttccatcttca |
360 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
42524309 |
cgaagttttttcagttatgcaatggatttgagcttccatcttca |
42524266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 117 - 360
Target Start/End: Complemental strand, 42508395 - 42508150
Alignment:
| Q |
117 |
taattgaaagaaaaatcaagtgattgaatttatatatataaa--attattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaa |
214 |
Q |
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||||||||||||||||||| | | |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42508395 |
taattgaaagaaaaatcaactaagtgaatttatatatatatataattattgtcatacagaagaggaattcatagtaaatgaatttgagccatatgccaaa |
42508296 |
T |
|
| Q |
215 |
ttccttagaacagtactttacaattagctaagctatgaaggtgataaaataacaaatcttgtgtgttcaacatctcatctacatggttgctttcatgccc |
314 |
Q |
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| T |
42508295 |
ttccttagaacaatactttacaactagctaagctatgaaggtgataaaataacaaatcttgtgtgttcatcctctcatctacatagttgctttcatgccc |
42508196 |
T |
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| Q |
315 |
aacgaagtttttccagttatgcaatggattcgagcttccatcttca |
360 |
Q |
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| T |
42508195 |
aacgaagttttttcagttatgcaatggatttgagcttccatcttca |
42508150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 42518036 - 42517777
Alignment:
| Q |
5 |
attgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaaccaacttaatcacactgattgcctaaagactaataagtaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42518036 |
attgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaaccaacttaatcacaccgattgcctaaagactaataagtaa |
42517937 |
T |
|
| Q |
105 |
tcctcgatttggtaattgaaagaaaaatcaagtgattgaatttatatatataaaattattgtcatacaaaagaggaattcatagtaaatgaatttgagcc |
204 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||| |
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| T |
42517936 |
tcctcgaattggtaattgaaagaaaaatcaagtgattgaatttatatatatagaattattgtcatacaggagaggaattcatagcaaatgaatttgggcc |
42517837 |
T |
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| Q |
205 |
atat--------gccaaattccttagaacagtactttacaattagctaagctatgaaggt |
256 |
Q |
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|||| || || ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
42517836 |
atatacctagggccctaaatccttggaacagtactttacaactagctaagctatgaaggt |
42517777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 42517682 - 42517611
Alignment:
| Q |
289 |
tcatctacatggttgctttcatgcccaacgaagtttttccagttatgcaatggattcgagcttccatcttca |
360 |
Q |
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|||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
42517682 |
tcatctacatagttgctttcatgcccaacaaagttttttcagttatgcaatggatttgagcttccatcttca |
42517611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 42524571 - 42524506
Alignment:
| Q |
9 |
agaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaaccaacttaat |
74 |
Q |
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|||||||| ||||||| | |||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
42524571 |
agaaaaattagataatgtgtagttgagttagactcacataagctccttatgtgcaaccaacttaat |
42524506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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