View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10853_9 (Length: 337)
Name: NF10853_9
Description: NF10853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10853_9 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 40278371 - 40278049
Alignment:
| Q |
1 |
cgaattatattatatcatagtcttaacacacctatcactactagagtagatatattggttaggaatgaagcaaaaatagaagtatgtgaaagcatattac |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40278371 |
cgaattatattatatcatagtcttaacac--ctatcactactagagtagatatattggttaggaatgaagcaaaaatagaagtatgtgaaagcatattac |
40278274 |
T |
|
| Q |
101 |
ttacccggatttataagtctttccggatatattagacacttcgatcaaagctgacctccatttctgcactctctcggagttacttccaaacttattttca |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||| ||||||| | ||||| |
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| T |
40278273 |
ttacccggatctataagtctttccggatatattagacacttcgatcaaagctgatctccatttttgtactctctccgagtctattccaaatcttctttca |
40278174 |
T |
|
| Q |
201 |
tgtcgagccatgtctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattcgatttct |
300 |
Q |
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||||||||||||||||||||||||| | ||||| || |||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
40278173 |
tgtcgagccatgtctttgccataacattctctcatataccttatttctgatggctccactttgaaaaagatcggccaaactaattgattattcgatttcc |
40278074 |
T |
|
| Q |
301 |
tacattcaagaatcttcacaggttc |
325 |
Q |
| |
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|||||||||||||||| ||| |||| |
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| T |
40278073 |
tacattcaagaatcttgacaagttc |
40278049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 114 - 325
Target Start/End: Complemental strand, 40377414 - 40377203
Alignment:
| Q |
114 |
taagtctttccggatatattagacacttcgatcaaagctgacctccatttctgcactctctcggagttacttccaaacttattttcatgtcgagccatgt |
213 |
Q |
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|||||| |||| || | |||||| ||||| | |||||||||| ||||||| || |||||||| |||| |||||||||| ||||||||| ||||||||| |
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| T |
40377414 |
taagtcattccagacaaattagaaacttcaagcaaagctgacttccatttttgtactctctccgagtctattccaaactttttttcatgttgagccatgt |
40377315 |
T |
|
| Q |
214 |
ctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattcgatttcttacattcaagaat |
313 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40377314 |
ctttgccataaccttttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattccatttcttacattcaagaat |
40377215 |
T |
|
| Q |
314 |
cttcacaggttc |
325 |
Q |
| |
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||||||| |||| |
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| T |
40377214 |
cttcacaagttc |
40377203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 114 - 325
Target Start/End: Complemental strand, 40387659 - 40387448
Alignment:
| Q |
114 |
taagtctttccggatatattagacacttcgatcaaagctgacctccatttctgcactctctcggagttacttccaaacttattttcatgtcgagccatgt |
213 |
Q |
| |
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|||||| ||||||| | |||||| ||||| | ||| |||||| ||||||| || |||||||| |||| | |||| || || ||||||||| ||||||||| |
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| T |
40387659 |
taagtcattccggacaaattagaaacttcaagcaatgctgacttccatttttgtactctctccgagtcaattccgaattttttttcatgttgagccatgt |
40387560 |
T |
|
| Q |
214 |
ctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattcgatttcttacattcaagaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40387559 |
ctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattccatttcttacattcaagaat |
40387460 |
T |
|
| Q |
314 |
cttcacaggttc |
325 |
Q |
| |
|
||||||| |||| |
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| T |
40387459 |
cttcacaagttc |
40387448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 114 - 325
Target Start/End: Complemental strand, 40334381 - 40334170
Alignment:
| Q |
114 |
taagtctttccggatatattagacacttcgatcaaagctgacctccatttctgcactctctcggagttacttccaaacttattttcatgtcgagccatgt |
213 |
Q |
| |
|
|||||| ||||||| | |||||| ||||| | |||||| ||| ||||||| || |||||||| |||| ||||||| | |||||||| ||||||||| |
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| T |
40334381 |
taagtcattccggacaaattagaaacttcaagcaaagcagacttccatttttgtactctctccgagtctattccaaatcttctttcatgttgagccatgt |
40334282 |
T |
|
| Q |
214 |
ctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattcgatttcttacattcaagaat |
313 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40334281 |
ctttgccataactttttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattccatttcttacattcaagaat |
40334182 |
T |
|
| Q |
314 |
cttcacaggttc |
325 |
Q |
| |
|
||||||| |||| |
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|
| T |
40334181 |
cttcacaagttc |
40334170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 94 - 304
Target Start/End: Original strand, 40597299 - 40597509
Alignment:
| Q |
94 |
atattacttacccggatttataagtctttccggatatattagacacttcgatcaaagctgacctccatttctgcactctctcggagttacttccaaactt |
193 |
Q |
| |
|
||||||| ||||||| | |||||| ||||||||| | ||| |||||||| | |||||||||| |||||||||| |||||||| |||| | ||||||| || |
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| T |
40597299 |
atattacatacccggttgtataagcctttccggacaaattcgacacttcaaacaaagctgacttccatttctgtactctctctgagtcaattccaaaatt |
40597398 |
T |
|
| Q |
194 |
attttcatgtcgagccatgtctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaattgattattc |
293 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| ||| |
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| T |
40597399 |
attttcatgttgagccatgtcttcgccataacaatttctcaaatgccttatgtctgacggtttcactttgtaaaagattggccaaactaattgattcttc |
40597498 |
T |
|
| Q |
294 |
gatttcttaca |
304 |
Q |
| |
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||||| |||| |
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| T |
40597499 |
aatttcataca |
40597509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 40303886 - 40303716
Alignment:
| Q |
147 |
aaagctgacctccatttctgcactctctcggagttacttccaaacttattttcatgtcgagccatgtctttgccataaccatttctcaaatgccttatgt |
246 |
Q |
| |
|
||||||||| |||||||||| | |||||| || | |||||| || || | || |||| || ||| | ||||||||||| |||||||| ||| ||||| | |
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|
| T |
40303886 |
aaagctgacttccatttctgtaatctctcagaatcacttccgaatttttgtttatgttcagtcatatatttgccataactatttctcatatgtcttatat |
40303787 |
T |
|
| Q |
247 |
ctgatggctctactttgtaaaagattggccaaactaattgattattcgatttcttacattcaagaatcttc |
317 |
Q |
| |
|
|||| || | |||||||||||||| |||||||| |||||||| ||||| |||||||| | ||| |||||| |
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|
| T |
40303786 |
ctgaaggtttcactttgtaaaagataggccaaaccaattgattcttcgacttcttacactgaaggatcttc |
40303716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 325
Target Start/End: Original strand, 40256730 - 40256871
Alignment:
| Q |
184 |
ttccaaacttattttcatgtcgagccatgtctttgccataaccatttctcaaatgccttatgtctgatggctctactttgtaaaagattggccaaactaa |
283 |
Q |
| |
|
||||||| |||||||||||| || ||| |||| ||||||| ||| || || ||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
40256730 |
ttccaaaattattttcatgttcagtcattgctttaccataactattcttctgataccttacatctgatggctccactttgtaaaaaattggccaaactaa |
40256829 |
T |
|
| Q |
284 |
ttgattattcgatttcttacattcaagaatcttcacaggttc |
325 |
Q |
| |
|
|||||| ||| |||| |||| ||||||||||| ||| |||| |
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|
| T |
40256830 |
ttgattcttcattttcatacactcaagaatcttaacaagttc |
40256871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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