View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10854_1 (Length: 493)

Name: NF10854_1
Description: NF10854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10854_1
NF10854_1
[»] chr1 (21 HSPs)
chr1 (13-493)||(4334771-4335242)
chr1 (28-489)||(4322896-4323339)
chr1 (282-347)||(2948501-2948566)
chr1 (277-339)||(3361658-3361720)
chr1 (282-347)||(3340440-3340505)
chr1 (276-339)||(3372630-3372693)
chr1 (282-347)||(3349314-3349379)
chr1 (277-325)||(3218548-3218596)
chr1 (170-225)||(2948386-2948441)
chr1 (170-225)||(3349439-3349494)
chr1 (32-115)||(3361879-3361962)
chr1 (403-489)||(3218662-3218748)
chr1 (282-336)||(9818943-9818997)
chr1 (268-325)||(2010503-2010560)
chr1 (34-87)||(2012133-2012186)
chr1 (268-325)||(2019716-2019773)
chr1 (34-87)||(2019936-2019989)
chr1 (410-471)||(3372513-3372574)
chr1 (268-325)||(6592526-6592583)
chr1 (34-87)||(9818695-9818748)
chr1 (269-325)||(6601779-6601835)
[»] chr2 (11 HSPs)
chr2 (29-336)||(20952941-20953239)
chr2 (29-336)||(20927019-20927317)
chr2 (268-346)||(39273982-39274060)
chr2 (29-333)||(20934406-20934701)
chr2 (402-483)||(20952815-20952896)
chr2 (402-489)||(20934265-20934352)
chr2 (402-489)||(39273854-39273941)
chr2 (175-224)||(39274104-39274153)
chr2 (268-322)||(20923434-20923488)
chr2 (184-224)||(20923532-20923572)
chr2 (34-82)||(20923671-20923719)
[»] chr5 (1 HSPs)
chr5 (170-224)||(17969916-17969970)
[»] chr4 (2 HSPs)
chr4 (293-339)||(21237475-21237521)
chr4 (170-216)||(21237598-21237644)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Original strand, 4334771 - 4335242
Alignment:
Q  13 aatattcactagacatagatcaagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaa 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334771 aatattcactagacatagatcaagacttttcaagtttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaa 4334870  T
Q  113 cttgaggtcaatgagaataaacaccaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaa 212  Q
    |||   | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334871 cttt--gaca-tgagaataaacaccaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaa 4334967  T
Q  213 tccaccgatcaatgttagtcacaagactatcctcgcccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334968 tccaccgatcaatgttagtcacaagactatcctcgcccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtac 4335067  T
Q  313 atgatcaacaatttgcaaaaacttgttgtcaataatagctaaagggtctccggatgttgcagcagggacggggacagggacaagttttgtatcaaaaaca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| |||    
T  4335068 atgatcaacaatttgcaaaaacttgttgtcaataatagctaaagggtctccggatgttgcagca------gggacagggacaagttttgtatcaaataca 4335161  T
Q  413 agatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaaataa 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4335162 agatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaaataa 4335242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 28 - 489
Target Start/End: Original strand, 4322896 - 4323339
Alignment:
Q  28 tagatcaagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaacttgaggtcaatgag 127  Q
    |||||||||||||||||| ||||| |||| |||||||| | | |||||||||||| ||||||   ||||||||||    |||||||||   | || ||||    
T  4322896 tagatcaagacttttcaagtttctgaagctttcaaacaccatcggaggtttaagccaacaccatcttaattttaagttgtgtaaacttt--gaca-tgag 4322992  T
Q  128 aataaacaccaaggtaacttgtagtaatcatc---tatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaa 224  Q
    |||||||||||||||| || |||||| || ||   |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4322993 aataaacaccaaggtatctggtagtattcttcctctatccaaacttccagcacaagctctttaatagaccttccaattagataaagaatccaccgatcaa 4323092  T
Q  225 tgttagtcacaagactatcctcgcccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaat 324  Q
     || | ||||||||||  |||| ||   ||||||||    |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  4323093 cgtcactcacaagactcccctcaccagggagatcata---gttacagaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaaccat 4323189  T
Q  325 ttgcaaaaacttgttgtcaataatagctaaagggtctccggatgttgcagcagggacggggacagggacaagttttgtatcaaaaacaagatttggaagt 424  Q
    || | ||||||||   |||||||   |||||||||||  ||| | | ||||||  ||          |||  || | ||||||  |||||||||||||||    
T  4323190 tttcgaaaacttgggctcaataa---ctaaagggtcttgggaagcttcagcagacac----------aca--ttgtctatcaagcacaagatttggaagt 4323274  T
Q  425 gtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaa 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4323275 gtataccattttttcctccaattcctcgacaaaacacttgttctcactgcgtccctaatcggcaa 4323339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 2948501 - 2948566
Alignment:
Q  282 tgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgttgtcaataa 347  Q
    |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||| | |||||||    
T  2948501 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataa 2948566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 3361720 - 3361658
Alignment:
Q  277 gaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgtt 339  Q
    |||| |||||||||| ||| |||||| ||||||||||||||||||||||  ||||||||||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgtt 3361658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 3340505 - 3340440
Alignment:
Q  282 tgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgttgtcaataa 347  Q
    |||||||||| |||||||||| ||||||||||||||||||||||   ||||||||| | |||||||    
T  3340505 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataa 3340440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 3372693 - 3372630
Alignment:
Q  276 tgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgtt 339  Q
    ||||| |||||||||| ||||||||   ||||||||||||||||||||||  ||||||||||||    
T  3372693 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgtt 3372630  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 3349379 - 3349314
Alignment:
Q  282 tgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgttgtcaataa 347  Q
    |||||||| | |||||||||| ||||||||||||||||| ||||  |||||||||| | |||||||    
T  3349379 tgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctctcaataa 3349314  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 3218548 - 3218596
Alignment:
Q  277 gaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 325  Q
    |||| ||||||| ||||||||||||| || |||||||||||||||||||    
T  3218548 gaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaatt 3218596  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 2948386 - 2948441
Alignment:
Q  170 tccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaat 225  Q
    |||||||||| ||||||||||  ||||||  |||||||| ||||||||||||||||    
T  2948386 tccaacacaaactctttaatatgccttccggttagatgacgaatccaccgatcaat 2948441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 3349494 - 3349439
Alignment:
Q  170 tccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaat 225  Q
    |||||||||| ||||||||||   |||||  |||||||||||||||||||||||||    
T  3349494 tccaacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaat 3349439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 3361962 - 3361879
Alignment:
Q  32 tcaagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaactt 115  Q
    |||||||||||||| ||  | |||||||||||| | ||||||||||||||| |||| |  ||||||| ||||  ||||||||||    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactt 3361879  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 3218662 - 3218748
Alignment:
Q  403 atcaaaaacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaa 489  Q
    |||||| |||| |||||| ||||| | |||||| |||||||| |  || ||||||||||||||| |||| || |||||||| |||||    
T  3218662 atcaaacacaatatttggtagtgtgtgccatttattcctccattcactggacaaaacacttgttttcactgcttccctaattggcaa 3218748  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 9818943 - 9818997
Alignment:
Q  282 tgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaactt 336  Q
    |||||||||| || ||||||| ||||||||||||||||| ||||  |||||||||    
T  9818943 tgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaaaaactt 9818997  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 2010560 - 2010503
Alignment:
Q  268 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 325  Q
    ||||| ||||||| |||||||||| || |||| || ||||||||||||||||| ||||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2010503  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 2012186 - 2012133
Alignment:
Q  34 aagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaaca 87  Q
    |||||||||||| ||  | |||||||||| ||||| ||||||||||||||||||    
T  2012186 aagacttttcaagttcttcaagccttcaatcatcgatggaggtttaagcaaaca 2012133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 2019773 - 2019716
Alignment:
Q  268 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 325  Q
    ||||| ||||||| |||||||||| || |||| || ||||||||||||||||| ||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 2019989 - 2019936
Alignment:
Q  34 aagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaaca 87  Q
    |||||||||||| ||  |||||||||||| | ||| ||||||||||||||||||    
T  2019989 aagacttttcaagttcttaaagccttcaatcgtcgatggaggtttaagcaaaca 2019936  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 3372574 - 3372513
Alignment:
Q  410 acaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcac 471  Q
    ||||||||||| ||||| |||||||| ||||||||  | || || |||||||||||||||||    
T  3372574 acaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcac 3372513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 6592526 - 6592583
Alignment:
Q  268 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 325  Q
    ||||| ||||||| | ||||||||||||||| | | ||||||||||||||||| ||||    
T  6592526 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 6592583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 9818695 - 9818748
Alignment:
Q  34 aagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaaca 87  Q
    ||||||||||  ||| | ||||||||||||||| ||||||||||||||| ||||    
T  9818695 aagacttttctgattccgaaagccttcaaacattgttggaggtttaagccaaca 9818748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 6601779 - 6601835
Alignment:
Q  269 gagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 325  Q
    |||| ||||||| | |||||||| |||||||| | ||||||||||||||||| ||||    
T  6601779 gagagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataatt 6601835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 29 - 336
Target Start/End: Complemental strand, 20953239 - 20952941
Alignment:
Q  29 agatcaagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaacttgaggtcaatgaga 128  Q
    ||||||||||| |||||  |  |||||||||||||| ||||||||||||||||  |||||| || |||||| |||  ||||||||||   | ||| ||||    
T  20953239 agatcaagactcttcaacctcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaatttcaaatgatgtaaacttt--gacaa-gaga 20953143  T
Q  129 ataaacaccaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaatgtt 228  Q
    |||| |||||||||| |||||||||  |  ||||||||| || || |||||||||||||||||| |||| | ||||||||||||||||||||||||| |     
T  20953142 ataagcaccaaggtatcttgtagtatcccgctatccaaaatttcagcacaagctctttaatagagcttctagttagatgaagaatccaccgatcaatatc 20953043  T
Q  229 agtcacaagactatcctcgcccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgc 328  Q
    | ||| || |||   ||| || |||||||  |||   | | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |    
T  20953042 actcagaaaact---ctcaccaatgagatgttca---tcatagaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaacaattttc 20952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 29 - 336
Target Start/End: Complemental strand, 20927317 - 20927019
Alignment:
Q  29 agatcaagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaacttgaggtcaatgaga 128  Q
    ||||||||||| |||||| |  |||||| ||||||| ||||||||||||||||  |||||| || ||||||||||  ||||||||||   | ||| ||||    
T  20927317 agatcaagactcttcaaactcttaaagctttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaacttt--gacaa-gaga 20927221  T
Q  129 ataaacaccaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaatgtt 228  Q
    |||| |||||||||| |||| ||||  | |||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  |     
T  20927220 ataagcaccaaggtatcttggagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatc 20927121  T
Q  229 agtcacaagactatcctcgcccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgc 328  Q
    || |||||||||   |||  | |||||| || ||   | |||||||||||||||||||||||| ||| |||||| |||||| ||||||||| ||| || |    
T  20927120 agacacaagact---ctcatcaatgagagca-ca--ctcagagaacttgaacatgttgattggcccataatgaagtaaaaggacatgatcagcaaatttc 20927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 39274060 - 39273982
Alignment:
Q  268 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgttgtcaata 346  Q
    |||||||| |||| ||||||| |||||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||    
T  39274060 agagaactcgaacttgttgataggtccagagtgaagtaaaagtacatgatcaacaattttcaaaagcttgttctcaata 39273982  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 333
Target Start/End: Complemental strand, 20934701 - 20934406
Alignment:
Q  29 agatcaagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaacttgaggtcaatgaga 128  Q
    |||||||||||||||||  | |||||||||| ||||| |||||||||||||||  ||||   || |||||| |||  ||||||||||   | ||| ||||    
T  20934701 agatcaagacttttcaagctcctaaagcctttaaacaacgttggaggtttaagacaacagaaatgtaatttcaaatgatgtaaacttt--gacaa-gaga 20934605  T
Q  129 ataaacaccaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaatgtt 228  Q
    |||| |||||||||| |||||||   || ||| | ||||| |||| ||||||||||||||||||| | | | ||||||  ||||||||| ||||||  |     
T  20934604 ataagcaccaaggtatcttgtagagttcctctgtacaaacatccagcacaagctctttaatagacttcctacttagatatagaatccactgatcaacatc 20934505  T
Q  229 agtcacaagactatcctcgcccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgc 328  Q
     | ||||||||| || ||    ||| || ||   |   ||||||||||||| ||||||||||| |||||||||  ||||||||||  || |||||||| |    
T  20934504 ggacacaagactctcatca---atgggagcacaca---tagagaacttgaatatgttgattggcccagaatgatgtaaaagtacactattaacaattttc 20934411  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 20952896 - 20952815
Alignment:
Q  402 tatcaaaaacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaat 483  Q
    ||||||| ||||||||||||||||| | |||||| |||||||| || || || ||||||||||||||||| || ||||||||    
T  20952896 tatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaat 20952815  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 20934352 - 20934265
Alignment:
Q  402 tatcaaaaacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaa 489  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||| ||  | || ||||||||||||||||| || |||||||| |||||    
T  20934352 tatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggcaa 20934265  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 39273941 - 39273854
Alignment:
Q  402 tatcaaaaacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaa 489  Q
    ||||||| ||||||||||| ||||| |||||||| | |||||| |  || |||||||||||||||||||| || |||||||| |||||    
T  39273941 tatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaa 39273854  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 39274153 - 39274104
Alignment:
Q  175 cacaagctctttaatagaccttccaattagatgaagaatccaccgatcaa 224  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  39274153 cacaagctctttaatagaccttccgattagataaacaatccaccgatcaa 39274104  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 20923488 - 20923434
Alignment:
Q  268 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaaca 322  Q
    ||||| ||||||| |||||||||| |||||||||| |||||||||||| ||||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaaca 20923434  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 20923572 - 20923532
Alignment:
Q  184 tttaatagaccttccaattagatgaagaatccaccgatcaa 224  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  20923572 tttaatagaccttcttgttagatgaagaatccaccgatcaa 20923532  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 20923719 - 20923671
Alignment:
Q  34 aagacttttcaaatttctaaagccttcaaacatcgttggaggtttaagc 82  Q
    |||||||||||| ||  | |||||||||||||||| |||||||||||||    
T  20923719 aagacttttcaagttcatgaagccttcaaacatcgctggaggtttaagc 20923671  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 17969970 - 17969916
Alignment:
Q  170 tccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaa 224  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  17969970 tccaacacaagctctttaacagatcttccagttagatgaagaatccaccgatcaa 17969916  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 21237521 - 21237475
Alignment:
Q  293 ccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgtt 339  Q
    |||||||||| || |||||||||||||||||||  ||||||||||||    
T  21237521 ccagaatgaagtagaagtacatgatcaacaattctcaaaaacttgtt 21237475  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 21237644 - 21237598
Alignment:
Q  170 tccaacacaagctctttaatagaccttccaattagatgaagaatcca 216  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||||||    
T  21237644 tccaacacaagttctttaatagaccttcttattaaatgaagaatcca 21237598  T

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