View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10854_low_3 (Length: 214)

Name: NF10854_low_3
Description: NF10854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10854_low_3
NF10854_low_3
[»] scaffold0288 (1 HSPs)
scaffold0288 (16-192)||(3763-3939)
[»] chr8 (3 HSPs)
chr8 (16-101)||(1674229-1674314)
chr8 (16-101)||(20863887-20863972)
chr8 (39-101)||(16686334-16686396)
[»] chr6 (29 HSPs)
chr6 (16-101)||(4617025-4617110)
chr6 (16-153)||(4625902-4626039)
chr6 (20-102)||(4299788-4299870)
chr6 (16-101)||(4601792-4601877)
chr6 (16-101)||(4480696-4480781)
chr6 (20-102)||(4267214-4267296)
chr6 (16-98)||(4570978-4571060)
chr6 (16-98)||(4504441-4504523)
chr6 (20-101)||(4557128-4557209)
chr6 (18-101)||(4505860-4505943)
chr6 (16-102)||(3171743-3171829)
chr6 (16-102)||(4256656-4256742)
chr6 (16-98)||(4585642-4585724)
chr6 (16-98)||(4592237-4592319)
chr6 (16-101)||(4516324-4516409)
chr6 (18-101)||(4492958-4493041)
chr6 (16-98)||(4490399-4490481)
chr6 (27-101)||(4563714-4563788)
chr6 (39-101)||(4606958-4607020)
chr6 (16-101)||(4560509-4560594)
chr6 (16-101)||(4613762-4613847)
chr6 (16-100)||(4392070-4392154)
chr6 (19-102)||(4622144-4622227)
chr6 (16-85)||(4568072-4568141)
chr6 (18-101)||(4515167-4515250)
chr6 (20-102)||(4260202-4260284)
chr6 (16-101)||(4461126-4461211)
chr6 (16-101)||(4574311-4574396)
chr6 (16-101)||(4579435-4579520)
[»] chr5 (2 HSPs)
chr5 (16-101)||(28000143-28000228)
chr5 (16-102)||(24103001-24103087)
[»] scaffold0477 (1 HSPs)
scaffold0477 (16-103)||(4730-4817)
[»] chr7 (1 HSPs)
chr7 (16-107)||(3086417-3086508)
[»] chr3 (1 HSPs)
chr3 (27-101)||(1281117-1281191)


Alignment Details
Target: scaffold0288 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 3763 - 3939
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaacttaaaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3763 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaacttaaaat 3862  T
Q  116 gtggttgtgtattcatcgatatcctcttgattttgtttgacagtcaatcaaatatgatacatttagttatttgagtt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3863 gtggttgtgtattcatcgatatcctcttgattttgtttgacagtcaatcaaatatgatacatttagttatttgagtt 3939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 1674314 - 1674229
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||||||||    
T  1674314 agaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaa 1674229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 20863887 - 20863972
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||||| |||| ||||| |  ||| ||||||| |||||| |||||||||| ||||||||||| ||||||||||||    
T  20863887 agaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaa 20863972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 16686334 - 16686396
Alignment:
Q  39 agaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||| |||||| |||||||||||||| |||| ||||| |||| |||||||||||||||||||    
T  16686334 agacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 16686396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4617110 - 4617025
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||||||||||    
T  4617110 agaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaa 4617025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 4626039 - 4625902
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaacttaaaat 115  Q
    ||||||||||||||||||||| ||| || |||||| |||||||||||||  |||| ||| | ||||| || || ||||||||||||| |||  |||||||    
T  4626039 agaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgcttaaacaatattagattaaaat 4625940  T
Q  116 gtggttgtgtattcatcgatatcctcttgattttgttt 153  Q
    ||||||||||||||||| ||  ||||||||||| ||||    
T  4625939 gtggttgtgtattcatcaatcccctcttgatttggttt 4625902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 4299788 - 4299870
Alignment:
Q  20 gaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    ||||||||||||||||||||  ||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  4299788 gaaggcagaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaat 4299870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4601877 - 4601792
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||||| |||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  4601877 agaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaa 4601792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4480781 - 4480696
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||||||| |||| ||||| |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  4480781 agaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaa 4480696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 4267214 - 4267296
Alignment:
Q  20 gaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    ||||||||| |||||||| ||||| ||||||  ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  4267214 gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaat 4267296  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 4571060 - 4570978
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 98  Q
    |||||||||| |||||| |||| ||||| |||||| |||||||||||||| |||| ||||| |||||||||||||||||||||    
T  4571060 agaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 4570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4504441 - 4504523
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 98  Q
    ||||||||||||||||| |||| ||||  |||||| |||||||||||||| |||||||||| |||||||| || |||||||||    
T  4504441 agaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 4557209 - 4557128
Alignment:
Q  20 gaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||| |||| ||||| |||||| |||||||||||||  |||| ||||| ||||||||||||||||||||||||    
T  4557209 gaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaa 4557128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 4505943 - 4505860
Alignment:
Q  18 aagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||| |||| ||||| | || ||||| |||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  4505943 aagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaa 4505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 3171829 - 3171743
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    ||||||||||||||||| | || |||   |||||| |||||||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  3171829 agaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaat 3171743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 4256656 - 4256742
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    |||||||| ||||| ||||||| || |||| ||||| |||||  |||||| ||||||||||||||||||||||  ||||||||||||    
T  4256656 agaagaagacagagaagaacaccagcccagctggtcattcattgatgaacttggacaaagttattaaggaggtcatgcttaaacaat 4256742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 4585724 - 4585642
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 98  Q
    |||||||||| |||||| |||| ||||| || ||| |||||||||| ||| |||| ||||| |||||||||||||||||||||    
T  4585724 agaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaa 4585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 4592319 - 4592237
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 98  Q
    |||||||||||||||||||||| ||||| || ||| ||||||| |||||| |||||||| | || |||||||| |||||||||    
T  4592319 agaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaa 4592237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4516409 - 4516324
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||||| |||| |||||||||||| |||||||  ||||| |||| ||||| |||||||||||  |||| ||||||    
T  4516409 agaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaa 4516324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 4493041 - 4492958
Alignment:
Q  18 aagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||| ||||   ||| |||||| |||||||||||||| |||||||||| || ||||| || ||||||||||||    
T  4493041 aagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaa 4492958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4490399 - 4490481
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 98  Q
    |||||||||||| |||| |||| ||||  |||||| |||||||||||||| |||||||||| |||||||| ||  ||||||||    
T  4490399 agaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 4563788 - 4563714
Alignment:
Q  27 gaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||| ||||| ||| | || ||| |||||||||||||| |||||||||| || |||||||||||||||||||||    
T  4563788 gaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaa 4563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 4606958 - 4607020
Alignment:
Q  39 agaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||  ||||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  4606958 agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaa 4607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4560594 - 4560509
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||| ||||| |||| | |||| ||||| || ||| |||||||||||||| |||| ||||| ||||||||||| ||||||||||||    
T  4560594 agaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa 4560509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 4613762 - 4613847
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||||| |||| |||||||| ||| ||||||| |||||| |||||||||| || || |||||  |||| ||||||    
T  4613762 agaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaa 4613847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 4392070 - 4392154
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaaca 100  Q
    ||||||||||| ||||| ||||  |||| ||||||  ||||| ||||||| |||||||| | ||||||||||| |||||||||||    
T  4392070 agaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca 4392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 4622227 - 4622144
Alignment:
Q  19 agaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    |||||||||| ||||  || || || |||||| |||||||||  ||| ||||||||||||||||||||||  ||||||||||||    
T  4622227 agaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaat 4622144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 4568141 - 4568072
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaagga 85  Q
    |||||||||||||| || |||| ||||| |||| |  ||||||||||||| |||||||||| ||||||||    
T  4568141 agaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 4515167 - 4515250
Alignment:
Q  18 aagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||| ||| |||||||||  || ||   ||||||| ||||| |||||||||| || |||||||| ||||||||||||    
T  4515167 aagaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaa 4515250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 4260202 - 4260284
Alignment:
Q  20 gaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    |||||||||||||||||| || |||  ||||  |||||  |||||| ||||||||||||||||| ||||  |||| |||||||    
T  4260202 gaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagttattaagcaggtcatgctcaaacaat 4260284  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4461211 - 4461126
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||||||||  |||||| | || ||||| || |||  |||||||| |||| |||||||||| |||||||| || ||||||||||||    
T  4461211 agaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaa 4461126  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4574396 - 4574311
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||||||||  |||| | |||| ||||| || ||| |||||||||  ||| |||| ||||| ||||||||||| ||||||||||||    
T  4574396 agaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaa 4574311  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4579520 - 4579435
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||||||||  |||||| |||| ||||| || ||  |||||||||||||| |||| ||||| ||||||||||| || || ||||||    
T  4579520 agaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaa 4579435  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 28000143 - 28000228
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| || ||| ||||||||    
T  28000143 agaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaa 28000228  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 24103087 - 24103001
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 102  Q
    ||||||||||||| |||||||| ||| | ||||||  ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  24103087 agaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaat 24103001  T

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Target: scaffold0477 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 4730 - 4817
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatg 103  Q
    |||||||||||||||||||||| ||  | |||||  |||||||||||||| |||||||||| |||||||||||  |||||||||||||    
T  4730 agaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaatg 4817  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 3086508 - 3086417
Alignment:
Q  16 agaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaatgttaa 107  Q
    ||||||| ||||| |||||||| ||    |||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||    
T  3086508 agaagaaagcagaagagaacaccagtatcggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaaaaatattaa 3086417  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 1281191 - 1281117
Alignment:
Q  27 gaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 101  Q
    ||||||||||||||||| |||||| |||||||||||||| | |||||||| ||||||||  | ||||||||||||    
T  1281191 gaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaa 1281117  T

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