View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_high_7 (Length: 386)
Name: NF10855A_high_7
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_high_7 |
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| [»] chr4 (5 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 37181187 - 37181550
Alignment:
| Q |
19 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181187 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
37181286 |
T |
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| Q |
119 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcatcaaatccaaaaccaaattct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37181287 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcatcaaatccaaaagcaaattct |
37181386 |
T |
|
| Q |
219 |
ctctatacaaacaaatacagtccttagctcctacaattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaa |
318 |
Q |
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| T |
37181387 |
ctctat----acaaatacagtccttagctcctacaattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaa |
37181482 |
T |
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| Q |
319 |
tgtcaagcatgagcatagaagctcgccatcttttgcaaactaccacacaaccaaatttaccaaccatt |
386 |
Q |
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| T |
37181483 |
tgtcaagcatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttaccagccatt |
37181550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 68 - 386
Target Start/End: Complemental strand, 37180512 - 37180187
Alignment:
| Q |
68 |
cttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctctt-atagttct-ccaaacaactctccttcaaatctctctcactcta |
165 |
Q |
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| T |
37180512 |
cttttgtcaaagtgaaacccaataagttgaactaactaaaaattgcaaaagctcttgatggttcttccgaactaccctccttcaaatctatctcaatcta |
37180413 |
T |
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| Q |
166 |
tataagaccatccactacccctttccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctcctacaat------tcat |
259 |
Q |
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| T |
37180412 |
tataagaccacccactatccctatgcttctcatcaaatcccaaatcaaattctctctatacaaa-atatactctccttagctcctacaattattcctcat |
37180314 |
T |
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| Q |
260 |
caagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcgccatcttttgcaaact |
359 |
Q |
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| T |
37180313 |
caaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaaact |
37180214 |
T |
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| Q |
360 |
accacacaaccaaatttaccaaccatt |
386 |
Q |
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| T |
37180213 |
accacacaaccaaatttaccaaccatt |
37180187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 91 - 386
Target Start/End: Original strand, 37189365 - 37189667
Alignment:
| Q |
91 |
aagttgaactaacttaaaattgcaaaagctctt-atagttc-tccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctt |
188 |
Q |
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|||||||||||||| |||||||||||||||||| || |||| ||| ||| || ||||||||||||||||||| ||||||||||| || |||||| |||| |
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| T |
37189365 |
aagttgaactaactaaaaattgcaaaagctcttgatggttcatccgaactaccctccttcaaatctctctcaatctatataagatcacccactatcccta |
37189464 |
T |
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| Q |
189 |
tccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctcctacaat------tcatcaagttatcaatggcctcaacca |
282 |
Q |
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| T |
37189465 |
tgcttctcatcaaatcccaaatcaaattctctctatacaaa-atataccctccttaggtcctacaattattcatcatcaaactatcaatggcaatattca |
37189563 |
T |
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| Q |
283 |
aatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcgccatcttttgcaaactaccacacaaccaaatttaccaac |
382 |
Q |
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||||||| || ||||||||||||| ||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189564 |
aatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttaccaac |
37189663 |
T |
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| Q |
383 |
catt |
386 |
Q |
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|||| |
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| T |
37189664 |
catt |
37189667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 352
Target Start/End: Complemental strand, 37188197 - 37187901
Alignment:
| Q |
64 |
aatgcttttgtcaaagtgaaacacaggaagttgaactaacttaa--------aattgcaaaagctctta-tagttctccaaacaactctccttcaaatct |
154 |
Q |
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|||| |||||||||||||||||| |||||||| ||| |||| || |||||||||||||| || | ||||||||||| || ||||||||||||| |
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| T |
37188197 |
aatgattttgtcaaagtgaaacagaggaagttaaacaaactaaagaaataaaaattgcaaaagctcgtagttgttctccaaactaccctccttcaaatct |
37188098 |
T |
|
| Q |
155 |
ctctcactctatata--agaccatccactacccctttccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctccta- |
251 |
Q |
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| T |
37188097 |
tgcttactctatatataagaccatccactactcctttccttctcataaaatctcaaagcaaattctctatatacaaa----tatactgcttagctcctat |
37188002 |
T |
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| Q |
252 |
caattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcgccatcttt |
351 |
Q |
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| T |
37188001 |
caattcataaggttatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttt |
37187902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 63 - 376
Target Start/End: Complemental strand, 38704569 - 38704270
Alignment:
| Q |
63 |
aaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctcttatagttctccaaacaactctccttcaaatctctctcact |
162 |
Q |
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||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||| ||| |||| |||||||| | || | ||||||||||| ||| |
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| T |
38704569 |
aaatggttttgtgaaagtaaaacacaggaagttgaagtaacttaagattgcaaatgcttttattattctccaagctaccttgattcaaatctcttctact |
38704470 |
T |
|
| Q |
163 |
ctatataagaccatccactacccctttccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctcctacaattcatcaa |
262 |
Q |
| |
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|||||||| ||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| | ||||||||||||| |||||||||| |
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| T |
38704469 |
ctatataaaaccatccactatccctttgcttttcataaaatccaaaagcaa--------tat----acaaatctattccttagctcctaaaattcatcaa |
38704382 |
T |
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| Q |
263 |
gttatcaatggcctcaaccaaatccttcattgcaac----tttacttcttgttgtcacaatgtcaagcatgagcatagaagctcgccatcttttgcaaac |
358 |
Q |
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|||||| |||| ||||||||| || |||| ||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||| |
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| T |
38704381 |
------aatggcatcaagcaaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaac |
38704288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 386
Target Start/End: Original strand, 27102761 - 27102877
Alignment:
| Q |
270 |
atggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcgccatcttttgcaaactaccacacaac |
369 |
Q |
| |
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|||||||||| ||| || ||||| || ||||||||||| |||| || |||||| ||||| | ||||||||||| | ||||||||||| || ||||||| |
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| T |
27102761 |
atggcctcaatgaaaaccatcattacatctttacttctttttgttaccttgtcaaacatgaacctagaagctcgcaaccttttgcaaacaactacacaac |
27102860 |
T |
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| Q |
370 |
caaatttaccaaccatt |
386 |
Q |
| |
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| ||||| |||| |||| |
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| T |
27102861 |
ccaatttgccaagcatt |
27102877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 27096525 - 27096592
Alignment:
| Q |
319 |
tgtcaagcatgagcatagaagctcgccatcttttgcaaactaccacacaaccaaatttaccaaccatt |
386 |
Q |
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|||||| ||||||| |||||||||| | ||||||||||| ||||||||||| ||||| |||| |||| |
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| T |
27096525 |
tgtcaaacatgagcctagaagctcgaaaccttttgcaaacaaccacacaacccaatttgccaaacatt |
27096592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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