View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_102 (Length: 357)
Name: NF10855A_low_102
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_102 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 34958930 - 34959277
Alignment:
| Q |
9 |
tcgtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcaggattg |
108 |
Q |
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| T |
34958930 |
tcgtgttcgtgtatgagtttgtgtttcatagtattaccatattccaaaagcaacttacatttcaaaatttcatatggttaa-gtcattgattcaggattg |
34959028 |
T |
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| Q |
109 |
tata-aaaaagttcatgccatattaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatg |
203 |
Q |
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| T |
34959029 |
tacacaaaaagtgcaggacatattaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatg |
34959128 |
T |
|
| Q |
204 |
tgcacattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatga |
303 |
Q |
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| T |
34959129 |
tgcacattgaaactatattaatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatga |
34959228 |
T |
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| Q |
304 |
tgcatgcattttattttaaagatatgattcatttgcatttcactcttgt |
352 |
Q |
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| T |
34959229 |
tgcatgcattttattttaaagatatgattcatttgcatttcactcttgt |
34959277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 3921654 - 3921320
Alignment:
| Q |
9 |
tcgtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcaggattg |
108 |
Q |
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| T |
3921654 |
tcgtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagtaattcacattcggaaatttcatatggttaaagtcattgattgaggattg |
3921555 |
T |
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| Q |
109 |
tata-aaaaagttcatgccatattaacaagtgcgcctcatcaacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgca |
207 |
Q |
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| T |
3921554 |
tacacaaaaagtgtaggacatattaacaagt----------aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgtgca |
3921465 |
T |
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| Q |
208 |
cattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgca |
307 |
Q |
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| T |
3921464 |
cattgaacctatattaatcatctctcacagttcaaagaaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgatgca |
3921365 |
T |
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| Q |
308 |
tgcattttattttaaagatatgattcatttgcatttcactcttgt |
352 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3921364 |
tgcattttattttaaagatatgattcatctgcatttcactcttgt |
3921320 |
T |
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