View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_106 (Length: 354)
Name: NF10855A_low_106
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_106 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 37180642 - 37180293
Alignment:
| Q |
7 |
ctgatatgaagaaaacaattaacctattaacctttgttattagtaagattataggatgtaaggactatcgaatatgtaatttnnnnnnn-tggtatttta |
105 |
Q |
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| T |
37180642 |
ctgataagaagaaaacaattaacatattaacctttgttattagtatgattataggatgtagggactatcgaatatgtaatttaaaaaaaatggtatttta |
37180543 |
T |
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| Q |
106 |
gtgtatttatatttataattaattggctcccttttgtcaaagtgaaacccaagaagttgaactnnnnnnnt-ttgcaaaagctcttgatggttcttccga |
204 |
Q |
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| T |
37180542 |
gtgtatttatatttataattaattggctcccttttgtcaaagtgaaacccaataagttgaactaactaaaaattgcaaaagctcttgatggttcttccga |
37180443 |
T |
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| Q |
205 |
actaccctccttcaaatctctctcaatctatataagaccacccactatccctatgcttctcatcaaatcccaaatcaaattctctctatacaaaatatac |
304 |
Q |
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| T |
37180442 |
actaccctccttcaaatctatctcaatctatataagaccacccactatccctatgcttctcatcaaatcccaaatcaaattctctctatacaaaatatac |
37180343 |
T |
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| Q |
305 |
cctccttaggtcctacaattattcatcatcaaactatcaatggcaatatt |
354 |
Q |
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| T |
37180342 |
tctccttagctcctacaattattcctcatcaaactatcaatggcaatatt |
37180293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 177 - 354
Target Start/End: Original strand, 37189384 - 37189561
Alignment:
| Q |
177 |
ttgcaaaagctcttgatggttcttccgaactaccctccttcaaatctctctcaatctatataagaccacccactatccctatgcttctcatcaaatccca |
276 |
Q |
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| T |
37189384 |
ttgcaaaagctcttgatggttcatccgaactaccctccttcaaatctctctcaatctatataagatcacccactatccctatgcttctcatcaaatccca |
37189483 |
T |
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| Q |
277 |
aatcaaattctctctatacaaaatataccctccttaggtcctacaattattcatcatcaaactatcaatggcaatatt |
354 |
Q |
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| T |
37189484 |
aatcaaattctctctatacaaaatataccctccttaggtcctacaattattcatcatcaaactatcaatggcaatatt |
37189561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 37181236 - 37181397
Alignment:
| Q |
136 |
cttttgtcaaagtgaaacccaagaagttgaactnnnnnnnt-ttgcaaaagctcttgatggttcttccgaactaccctccttcaaatctctctcaatcta |
234 |
Q |
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| T |
37181236 |
cttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctctt-atagttct-ccaaacaactctccttcaaatctctctcactcta |
37181333 |
T |
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| Q |
235 |
tataagaccacccactatccctatgcttctcatcaaatcccaaatcaaattctctctatacaaa |
298 |
Q |
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| T |
37181334 |
tataagaccatccactacccctttccttctcatcaaatccaaaagcaaattctctctatacaaa |
37181397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 37188117 - 37188021
Alignment:
| Q |
204 |
aactaccctccttcaaatctctctcaatc--tatataagaccacccactatccctatgcttctcatcaaatcccaaatcaaattctctctatacaaa |
298 |
Q |
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| T |
37188117 |
aactaccctccttcaaatcttgcttactctatatataagaccatccactactcctttccttctcataaaatctcaaagcaaattctctatatacaaa |
37188021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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