View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_108 (Length: 353)
Name: NF10855A_low_108
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_108 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 5827291 - 5826970
Alignment:
| Q |
19 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827291 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
5827192 |
T |
|
| Q |
119 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827191 |
ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
5827092 |
T |
|
| Q |
219 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5827091 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtttgaaagtt |
5826992 |
T |
|
| Q |
319 |
ttgatattcagtccatctagta |
340 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
5826991 |
ttgatattcagtccatctagta |
5826970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 5768835 - 5768517
Alignment:
| Q |
22 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
121 |
Q |
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||||| ||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || ||||| ||||||| ||||||||||||||| || | |
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| T |
5768835 |
gcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccga |
5768736 |
T |
|
| Q |
122 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
221 |
Q |
| |
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| || || | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5768735 |
cagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttcttt |
5768636 |
T |
|
| Q |
222 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5768635 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagttttt |
5768536 |
T |
|
| Q |
322 |
atattcagtccatctagta |
340 |
Q |
| |
|
|||| || ||||||||||| |
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|
| T |
5768535 |
atatccactccatctagta |
5768517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 340
Target Start/End: Original strand, 5829613 - 5829931
Alignment:
| Q |
22 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
121 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| | || | ||||||||| || || || || || ||||| || || | || ||||||||||| || | |
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|
| T |
5829613 |
gcctcatcaagcaaaagtattttggggttttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaa |
5829712 |
T |
|
| Q |
122 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
221 |
Q |
| |
|
| || || | || ||| |||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |
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|
| T |
5829713 |
cagacgtgtcatatccatctggaagattacttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttt |
5829812 |
T |
|
| Q |
222 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
321 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||| |
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|
| T |
5829813 |
tccataacctatgttagcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagcttaatctgaaagttttg |
5829912 |
T |
|
| Q |
322 |
atattcagtccatctagta |
340 |
Q |
| |
|
| || || ||||||||||| |
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|
| T |
5829913 |
agatccactccatctagta |
5829931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
| Q |
19 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5794883 |
gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 29327124 - 29327445
Alignment:
| Q |
19 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
118 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| |||||||||||||||| |
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| T |
29327124 |
gttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgc |
29327223 |
T |
|
| Q |
119 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
218 |
Q |
| |
|
| || || || | |||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
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|
| T |
29327224 |
caacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttc |
29327323 |
T |
|
| Q |
219 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
318 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
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|
| T |
29327324 |
tttaccataagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttattctgaaagtt |
29327423 |
T |
|
| Q |
319 |
ttgatattcagtccatctagta |
340 |
Q |
| |
|
||||||| || ||||||||||| |
|
|
| T |
29327424 |
ttgatatccactccatctagta |
29327445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
49 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
101 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| |
|
|
| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 17872391 - 17872447
Alignment:
| Q |
67 |
gcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctacc |
123 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | |||||||| |||||| |
|
|
| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcctacc |
17872447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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