View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_109 (Length: 353)
Name: NF10855A_low_109
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_109 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 23496021 - 23495688
Alignment:
| Q |
6 |
attaccaacatgttctttgcaatattgaatgatattttggacctttagatagaatgagatggtgaaatacatgaccatgctgaaatgaatcattatttga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23496021 |
attaccaacatgttctttgcaatattgaatgatattttggacctttagatagaatgagatggtgaaatacatgaccatgctgaaatgaatcagtatttga |
23495922 |
T |
|
| Q |
106 |
tataggacttgtttattatcacatgtctgcttgagcatcttcattggtgaaaagggaggttattacatgtctacatctacatcaaatgtaatattattgg |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495921 |
tataggacttgtttattattacatgtctgcttaagcatcttcattggtgaaaagggaggttattacatgtctacatctacatcaaatgtaatattattgg |
23495822 |
T |
|
| Q |
206 |
ctctgatgagtgagnnnnnnntgcaaataacaaaactctcgtatcgttctcacggctagaatccatgttaacataatccaattgtataactcaggaataa |
305 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23495821 |
ctctgatgagtgaaaaaaaaatgcaaagaacaaaactctcgtatcgttctcacggctagaatccatgttaacatgctccaattgtataactcaggaataa |
23495722 |
T |
|
| Q |
306 |
tcgattcttaaatctaagaactcacttaagaata |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23495721 |
tcgattcttaaatctaagaactcacttaagaata |
23495688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University