View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_11 (Length: 534)

Name: NF10855A_low_11
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_11
NF10855A_low_11
[»] chr8 (8 HSPs)
chr8 (45-525)||(3602832-3603315)
chr8 (267-523)||(14341638-14341890)
chr8 (167-259)||(41999973-42000065)
chr8 (167-255)||(45093130-45093218)
chr8 (173-259)||(14769780-14769866)
chr8 (162-259)||(9215907-9216004)
chr8 (7-46)||(3603401-3603440)
chr8 (209-259)||(33372929-33372979)
[»] chr2 (3 HSPs)
chr2 (167-259)||(11996061-11996153)
chr2 (167-259)||(42865606-42865698)
chr2 (167-255)||(24126745-24126833)
[»] chr7 (4 HSPs)
chr7 (167-259)||(45034004-45034096)
chr7 (167-259)||(46045596-46045688)
chr7 (167-260)||(38110999-38111092)
chr7 (167-259)||(8035400-8035492)
[»] chr5 (2 HSPs)
chr5 (167-259)||(14024624-14024716)
chr5 (167-259)||(32386177-32386269)
[»] chr4 (3 HSPs)
chr4 (167-259)||(1369123-1369215)
chr4 (167-259)||(28945694-28945786)
chr4 (167-259)||(36859134-36859226)
[»] chr1 (2 HSPs)
chr1 (167-259)||(6293705-6293797)
chr1 (167-258)||(28705680-28705771)
[»] chr3 (1 HSPs)
chr3 (160-231)||(1182170-1182241)


Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 45 - 525
Target Start/End: Complemental strand, 3603315 - 3602832
Alignment:
Q  45 gatgaagatatattgatcctagaggtctccaaaatagtcgctaattcacttagtgatcgattttctccatttagtgaccaatttttcggtttctaaaacc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3603315 gatgaagatatattgatcctagaggtctccaaaatagtcgctaattcacttagtgatcgattttctccatttagtgaccaatttttcggtttctaaaact 3603216  T
Q  145 agttttcttgtagtgcctcattaaaatgaaactatatacatcggttggatgccacct---ttgattggttgagttaagctcaattgtgatgatgtttgga 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  3603215 agttttcttgtagtgcctcattaaaatgaaactatatacatcggttggatgccacctaatttgattggttgagttaagctcaattgtgatgatgtttgga 3603116  T
Q  242 aggaatttggtactcttgtgagattgaaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacgatactgaggattat 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3603115 aggaatttggtactcttgtgagattgaaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacggtactgaggattat 3603016  T
Q  342 tacaatgaaagttgcagtatatattatgctgaaatatgtaaaaatggtgctgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaat 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  3603015 tacaatgaaagttgcagtatatattatgctgaaatatgtaaaaatggtgttgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaac 3602916  T
Q  442 atgaaattccatgattacaagccatatttttattatattgtgggtaagtaattaatgctaacactattatagatttatattctt 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||| || ||||| |||||||||||    
T  3602915 atgaaattccatgattacaagccatatttttattatattgtgggtaggttcctaatgctaacattaatatagttttatattctt 3602832  T

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Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 267 - 523
Target Start/End: Complemental strand, 14341890 - 14341638
Alignment:
Q  267 gaaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacgatactgaggattattacaatgaaagttgcagtatatatt 366  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14341890 gaaaaatttaccattgcttcccttgtattagttctccttgttatggcaattactatcgacggtactgaggattattacaatgaaagttgcagtatatatt 14341791  T
Q  367 atgctgaaatatgtaaaaatggtgctgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaatatgaaattccatgattacaagccat 466  Q
    |||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14341790 atgctgaaatatgtaaaaatcgtgctatttgtttggaagctccttggctttgtatttgttgtgattttcaaaaacatgaaattccatgattacaagccat 14341691  T
Q  467 atttttattatattgtgggtaagtaattaatgctaacactattatagatttatattc 523  Q
    |||||||||||||||||||||||    ||||||||||| ||||||||||||||||||    
T  14341690 atttttattatattgtgggtaag----taatgctaacattattatagatttatattc 14341638  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 41999973 - 42000065
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  41999973 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 42000065  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 45093130 - 45093218
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtact 255  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||    
T  45093130 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaaggcatctggtact 45093218  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 14769780 - 14769866
Alignment:
Q  173 aaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||||||||||||||||||||||  |||| | | |||||||||||| || |||||||||| |||||| |||| || | |||||||||    
T  14769780 aaactatatacatcggttggatgagacctctaactggttgagttaaacttaattgtgatggtgtttgaaagggatctagtactcttg 14769866  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 9215907 - 9216004
Alignment:
Q  162 tcattaaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| |||| ||||||||||||| | ||||||||| |||| || ||||||| |||||| | |||||||||  ||||  ||||| || |||||||||||    
T  9215907 tcatcaaaaggaaactatatacaccagttggatgcgacctctggttggttgggttaagattaattgtgatagtgttctgaagggatctggtactcttg 9216004  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 3603440 - 3603401
Alignment:
Q  7 attggaagtacctacacaataatcaagagtgctgatagga 46  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  3603440 attggaagtacctacagaataatcaagagtgttgatagga 3603401  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 33372929 - 33372979
Alignment:
Q  209 gttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| |||||||| |||||||||| ||||||||||| || |||||||||||    
T  33372929 gttgggttaagcttaattgtgatggtgtttggaagggatctggtactcttg 33372979  T

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Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 11996153 - 11996061
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||| || |||||||| ||||||||||||||    
T  11996153 aaaaggaaactatatacatcggttggatgcgacctctgattggttgggttaagcttaattgtgatggtgcttggaagggatttggtactcttg 11996061  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 42865606 - 42865698
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| ||  ||||||| || |||||||||||    
T  42865606 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcctggaagggatctggtactcttg 42865698  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 24126833 - 24126745
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtact 255  Q
    |||| ||||||||||||||||||||||||| ||||  |||| |||| |||||||| ||||| |||| || |||||||| || |||||||    
T  24126833 aaaaggaaactatatacatcggttggatgcgacctccgatttgttgggttaagcttaattgcgatggtgcttggaagggatctggtact 24126745  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 45034096 - 45034004
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| |||| |||||||||||||||||||| ||||  ||||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  45034096 aaaaggaaattatatacatcggttggatgcgacctccgattggttgggttaagcttaattgtgatggtgcttggaagggatatggtactcttg 45034004  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 46045596 - 46045688
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  46045596 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 46045688  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 38111092 - 38110999
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttgt 260  Q
    |||| |||| |||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || ||||||||||||    
T  38111092 aaaaggaaattatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttgt 38110999  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 8035400 - 8035492
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||   |||| ||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  8035400 aaaaggaaactatatacatcggttggatgcgacctccaattgcttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 8035492  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 14024624 - 14024716
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  14024624 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 14024716  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 32386177 - 32386269
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||| |||||||| |||||||||| || ||||| || || |||||||||||    
T  32386177 aaaaggaaactatatacatcggttggatgcgacctccgattggttgggttaagcttaattgtgatggtgcttggatgggatctggtactcttg 32386269  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 1369123 - 1369215
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  1369123 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 1369215  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 28945786 - 28945694
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  28945786 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 28945694  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 36859226 - 36859134
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| |||| |||||||||||||||| ||| ||||  ||||||||  ||||||||  ||||||||| || ||| |||| || |||||||||||    
T  36859226 aaaaggaaaatatatacatcggttgggtgcgacctcagattggttaggttaagcttgattgtgatggtgcttgaaagggatctggtactcttg 36859134  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 6293705 - 6293797
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 259  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  6293705 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 6293797  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 28705680 - 28705771
Alignment:
Q  167 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactctt 258  Q
    |||| ||||||||||||||||||||| ||  ||||  ||||||||| |||||||| |||| ||||| || |||||||| || ||||||||||    
T  28705680 aaaaggaaactatatacatcggttgggtgtgacctcagattggttgggttaagcttaattttgatggtgcttggaagggatctggtactctt 28705771  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 1182170 - 1182241
Alignment:
Q  160 cctcattaaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgat 231  Q
    |||||| |||| |||||||||||||||||||| |||| |||| |||||||||| |||||||| |||||||||    
T  1182170 cctcatcaaaaggaaactatatacatcggttgaatgcgacctctgattggttgtgttaagcttaattgtgat 1182241  T

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