View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_113 (Length: 349)
Name: NF10855A_low_113
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 6261185 - 6261361
Alignment:
| Q |
9 |
aagaaaataattgtttttctttatgtaccactttgctatagaaaactgatgaagacataaagaggttctattttttgttgaattacggtaggtgtatttg |
108 |
Q |
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| T |
6261185 |
aagaaaataattgtttttctttatgtaccactttgctatagaaaactgatgaagacaaaaag--gttctattttttgttgaattatggtaggtgtatttg |
6261282 |
T |
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| Q |
109 |
caaatataccactttgctttatattgtttatcagtcacgcatcttagaagagaggtgaggaactttaagtgtaactaag |
187 |
Q |
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| T |
6261283 |
caaatataccactttgctatatattgtttatcagtcacacatcgtagaagagaggtgaggaactttaagtgtaactaag |
6261361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 6262476 - 6262603
Alignment:
| Q |
203 |
aggtatacataaatttgtcttagttgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
302 |
Q |
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| T |
6262476 |
aggtatacataaatttgtcttaattgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
6262575 |
T |
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| Q |
303 |
tacatagttccttgaaattcttccattt |
330 |
Q |
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| T |
6262576 |
tacatagttccttgaaattcttccattt |
6262603 |
T |
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