View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_126 (Length: 340)
Name: NF10855A_low_126
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_126 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 31607030 - 31607369
Alignment:
| Q |
1 |
ggttttaacggaggagcgccttttcaagtgggagagattacatccttggcaatattcaatactcatatgtgcactgctacaagcatacttgtttggattt |
100 |
Q |
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| T |
31607030 |
ggttttaacggaggagcgccttttcaagtgggagagattacatccttggctatattcaatactcatttgtgcactgctacaagcatacttgtttggattt |
31607129 |
T |
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| Q |
101 |
ctctagatatggctgtatacaagaagggctcattgataggttctgtccaaggaatgatgactggtctcgtttgcattactccgggtgcaggtaaagctca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
31607130 |
ctctagatatggctgtatacaagaaaggctcattgataggttctgtccaaggaatgatgactggtctcgtttgcatcacaccgggtgcaggtaaagctca |
31607229 |
T |
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| Q |
201 |
cacaaaacgacacattcaatagttgcgagatataattctgaaaacttctttctaagctaacatgtccacaagtaatgacattatttttacctatgtatgt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607230 |
cacaaaacgacacattcagtagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttacctatgtatgt |
31607329 |
T |
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| Q |
301 |
gaccaggattggtggatccttgggcagcaatattgatggg |
340 |
Q |
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||| ||||||||||||||| |||||||||||||||||||| |
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| T |
31607330 |
gacaaggattggtggatccatgggcagcaatattgatggg |
31607369 |
T |
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