View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_127 (Length: 339)
Name: NF10855A_low_127
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_127 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 51873632 - 51873964
Alignment:
| Q |
7 |
gtagggcccaaacctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
106 |
Q |
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| T |
51873632 |
gtagggcccaagcctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
51873731 |
T |
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| Q |
107 |
ttcaaacacaatccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
206 |
Q |
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| T |
51873732 |
ttcaaacacagtccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
51873831 |
T |
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| Q |
207 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcccaaactactcataaatgaccctcct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51873832 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcctaaactactcataaatgaccctcct |
51873931 |
T |
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| Q |
307 |
catgatgaagttcaagatcaaaatgaacttcaa |
339 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51873932 |
catgatgaagttcaagatcaaaatgaacttcaa |
51873964 |
T |
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