View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_13 (Length: 516)

Name: NF10855A_low_13
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_13
NF10855A_low_13
[»] chr8 (4 HSPs)
chr8 (23-380)||(8683394-8683745)
chr8 (78-130)||(29749287-29749339)
chr8 (70-118)||(14928164-14928212)
chr8 (69-101)||(18732950-18732982)
[»] chr1 (8 HSPs)
chr1 (70-149)||(24808396-24808475)
chr1 (75-118)||(4541105-4541148)
chr1 (68-118)||(15255151-15255201)
chr1 (70-99)||(33651754-33651783)
chr1 (78-110)||(8344566-8344598)
chr1 (78-118)||(15707576-15707616)
chr1 (60-148)||(43391459-43391547)
chr1 (86-118)||(49825928-49825960)
[»] chr5 (5 HSPs)
chr5 (60-147)||(40677892-40677979)
chr5 (75-118)||(40877066-40877109)
chr5 (68-146)||(42440145-42440223)
chr5 (59-105)||(2643961-2644007)
chr5 (60-128)||(34101507-34101575)
[»] chr7 (7 HSPs)
chr7 (69-115)||(24673358-24673404)
chr7 (77-118)||(34925273-34925314)
chr7 (75-117)||(6518102-6518144)
chr7 (78-112)||(8558804-8558838)
chr7 (60-118)||(19130149-19130207)
chr7 (69-105)||(3250026-3250062)
chr7 (76-116)||(34501942-34501982)
[»] chr3 (3 HSPs)
chr3 (60-130)||(23790355-23790425)
chr3 (84-118)||(24276634-24276668)
chr3 (78-118)||(44622480-44622520)
[»] chr2 (7 HSPs)
chr2 (60-118)||(38434187-38434245)
chr2 (89-149)||(45071579-45071639)
chr2 (78-149)||(27242720-27242791)
chr2 (75-110)||(41947073-41947108)
chr2 (78-119)||(27678734-27678775)
chr2 (62-123)||(37449454-37449515)
chr2 (63-115)||(11521801-11521853)
[»] chr4 (8 HSPs)
chr4 (58-102)||(16495123-16495167)
chr4 (60-123)||(38596787-38596850)
chr4 (77-118)||(32427058-32427099)
chr4 (71-116)||(47213474-47213519)
chr4 (86-126)||(12909574-12909614)
chr4 (61-105)||(19984279-19984323)
chr4 (77-117)||(45554117-45554157)
chr4 (59-115)||(45599615-45599671)
[»] scaffold0223 (1 HSPs)
scaffold0223 (61-114)||(10604-10657)
[»] chr6 (4 HSPs)
chr6 (77-118)||(507832-507873)
chr6 (77-117)||(3247406-3247446)
chr6 (60-116)||(20869909-20869965)
chr6 (78-122)||(23137478-23137522)
[»] scaffold0898 (1 HSPs)
scaffold0898 (60-112)||(617-669)
[»] scaffold0790 (1 HSPs)
scaffold0790 (60-104)||(651-695)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 8683745 - 8683394
Alignment:
Q  23 agtaaaacagcgaatgatatagattgaactataacaagtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  8683745 agtaaaacagcgaatgatatagattgaactataacaagtcaatcgtggatcacagaaaattgtagtttgttcaaattctgctatgctaaagtgctagagc 8683646  T
Q  123 gttgctatggccgttatttgacaacacacagaacaatagcagttttctaaaatagcgcctggcgccactatatccgctatttcacaacctacaagagaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683645 gttgctatggccgttatttgacaacacacagaacaatagcagttttctaaaatagcgcctggcgccactatatccgctatttcacaacctacaagagaca 8683546  T
Q  223 ctgcccaaatttctgaaagcaatgagtcaagaaaggacaaaatttgctacctgtaagcacataatggaagacgattcagaaagcaatgaatcaagaatcc 322  Q
    |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683545 ctgcccaaatttctgaaagcaatga------aaaggacaaaatttgctacctgtaagcacataatggaagacgattcagaaagcaatgaatcaagaatcc 8683452  T
Q  323 tttgattcctagctaaccaacgtgatctgaagtcactttctctgagtccttgattctg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683451 tttgattcctagctaaccaacgtgatctgaagtcactttctctgagtccttgattctg 8683394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 29749339 - 29749287
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctat 130  Q
    |||||| || |||||||||||| |||||||||||||||||| |||| ||||||    
T  29749339 aaaataatattttgttcaaattttgctatgctacagtgctatagcgctgctat 29749287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 14928164 - 14928212
Alignment:
Q  70 gatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||| ||||||||||| | ||||||||||| |||||||| |||||||||    
T  14928164 gatcgcagaaaatagtgggttgttcaaattttgctatgcaacagtgcta 14928212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 18732982 - 18732950
Alignment:
Q  69 ggatcacagaaaatagtagtttgttcaaattct 101  Q
    |||||||||||||| ||||||||||||||||||    
T  18732982 ggatcacagaaaattgtagtttgttcaaattct 18732950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 24808475 - 24808396
Alignment:
Q  70 gatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 149  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||  |||  ||||||| || ||||||||||||||    
T  24808475 gatcacggaaaacagtggtttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacac 24808396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 4541105 - 4541148
Alignment:
Q  75 cagaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||    
T  4541105 cagaaaatagttgtttgttcaaattccgctatgctacagcgcta 4541148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 15255151 - 15255201
Alignment:
Q  68 tggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||||| ||||||||||| ||||||| |||||||||||||| ||| |||||    
T  15255151 tggatcgcagaaaatagtggtttgtttaaattctgctatgcaacattgcta 15255201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 33651783 - 33651754
Alignment:
Q  70 gatcacagaaaatagtagtttgttcaaatt 99  Q
    ||||||||||||||||||||||||||||||    
T  33651783 gatcacagaaaatagtagtttgttcaaatt 33651754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 8344598 - 8344566
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgcta 110  Q
    |||||||| ||||||||||||||||||||||||    
T  8344598 aaaatagtggtttgttcaaattctgctatgcta 8344566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 15707576 - 15707616
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    ||||||| ||||||||||||||| ||||||||| |||||||    
T  15707576 aaaatagcagtttgttcaaattccgctatgctatagtgcta 15707616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 43391459 - 43391547
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaaca 148  Q
    ||||||||  |||| || ||||||| ||||||||  | ||||||||||| ||||||||| |||  |||||| ||||  |||||||||||    
T  43391459 gtcaatcgcagatcgcaaaaaatagcagtttgtttgagttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaaca 43391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 49825960 - 49825928
Alignment:
Q  86 agtttgttcaaattctgctatgctacagtgcta 118  Q
    ||||||||||||||||||||||| |||||||||    
T  49825960 agtttgttcaaattctgctatgcaacagtgcta 49825928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 40677892 - 40677979
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaac 147  Q
    |||||| | ||||| | ||||||||| ||||||||||||||||||||| ||  |||||| |||| || ||| |||| |||||||||||    
T  40677892 gtcaatagcggatcccggaaaatagttgtttgttcaaattctgctatgatatggtgctatagcgctgttatagccgctatttgacaac 40677979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 40877066 - 40877109
Alignment:
Q  75 cagaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  40877066 cagaaaatagtagtttgttcaaattctgctttgctatagtgcta 40877109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 42440223 - 42440145
Alignment:
Q  68 tggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaa 146  Q
    |||||| ||||||| ||| |||||||||||||| |||||||||||||| || |||  |||||| |||  ||||||||||    
T  42440223 tggatcgcagaaaacagtggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttgacaa 42440145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 2644007 - 2643961
Alignment:
Q  59 agtcaatcgtggatcacagaaaatagtagtttgttcaaattctgcta 105  Q
    ||||||||||||||  ||| |||||| ||||||||||||||||||||    
T  2644007 agtcaatcgtggattgcagtaaatagcagtttgttcaaattctgcta 2643961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 34101507 - 34101575
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgct 128  Q
    |||||||||||||  |||||||||| ||||||  ||||||| |||||||| ||||  || |||||||||    
T  34101507 gtcaatcgtggattgcagaaaatagcagtttgcacaaattccgctatgcttcagttttatagcgttgct 34101575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 24673358 - 24673404
Alignment:
Q  69 ggatcacagaaaatagtagtttgttcaaattctgctatgctacagtg 115  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  24673358 ggatcacagaaaatagtggtttgttcaaattcagctatgcaacagtg 24673404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 34925273 - 34925314
Alignment:
Q  77 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  34925273 gaaaatagcagtttgttcaaattctgctatgctacaatgcta 34925314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 6518102 - 6518144
Alignment:
Q  75 cagaaaatagtagtttgttcaaattctgctatgctacagtgct 117  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||    
T  6518102 cagaaaatagtggtttgttcaaattctgctacgctacattgct 6518144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 8558804 - 8558838
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctaca 112  Q
    ||||||||||||||||||||||| |||||||||||    
T  8558804 aaaatagtagtttgttcaaattccgctatgctaca 8558838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 19130149 - 19130207
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||||||| ||||| |  ||||||| |||||||||||| |||||||||||| |||||||    
T  19130149 gtcaatcgcggatcccgaaaaataggagtttgttcaaaatctgctatgctatagtgcta 19130207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 3250026 - 3250062
Alignment:
Q  69 ggatcacagaaaatagtagtttgttcaaattctgcta 105  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  3250026 ggatcacagaaaatagtggtttcttcaaattctgcta 3250062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 34501942 - 34501982
Alignment:
Q  76 agaaaatagtagtttgttcaaattctgctatgctacagtgc 116  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  34501942 agaaaatagtagtttgttcagtttctgctatgctatagtgc 34501982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 23790355 - 23790425
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctat 130  Q
    ||||||||||||||| ||||| |||  ||||| ||| |||| ||||||||||||||||| |||| ||||||    
T  23790355 gtcaatcgtggatcatagaaagtagcggtttgatcacattccgctatgctacagtgctatagcgctgctat 23790425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 24276668 - 24276634
Alignment:
Q  84 gtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||||||||||||||||||||||||||| ||||||    
T  24276668 gtagtttgttcaaattctgctatgctaccgtgcta 24276634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 44622480 - 44622520
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  44622480 aaaatagaagcttgttcaaattctgctatgctacaatgcta 44622520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 38434245 - 38434187
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    ||||||||  || ||| |||||||| |||||||||||||||||||||| ||||||||||    
T  38434245 gtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgcta 38434187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 45071579 - 45071639
Alignment:
Q  89 ttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 149  Q
    |||||||||||||||||||||||||||||  |||  |||||| || | |||||||||||||    
T  45071579 ttgttcaaattctgctatgctacagtgctgtagcactgctatagctgctatttgacaacac 45071639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 27242720 - 27242791
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 149  Q
    ||||||| | ||| ||||||||||||||| ||||| ||||| || | || ||| ||||||||||||||||||    
T  27242720 aaaatagcaatttcttcaaattctgctatcctacaatgctatagtgctggtatagccgttatttgacaacac 27242791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 41947073 - 41947108
Alignment:
Q  75 cagaaaatagtagtttgttcaaattctgctatgcta 110  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41947073 cagaaaatagtggtttgttcaaattctgctatgcta 41947108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 27678775 - 27678734
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctacagtgctag 119  Q
    |||||||||||||||||||||| |||||||||| || |||||    
T  27678775 aaaatagtagtttgttcaaattttgctatgctatagcgctag 27678734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 37449515 - 37449454
Alignment:
Q  62 caatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcg 123  Q
    |||||||||||  |||||||||| |||||||||||| | ||||| |||| ||||||| ||||    
T  37449515 caatcgtggattgcagaaaatagcagtttgttcaaactatgctacgctagagtgctaaagcg 37449454  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 11521801 - 11521853
Alignment:
Q  63 aatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtg 115  Q
    ||||| |||||| |||||||||  |||||||||||||| |||||| |||||||    
T  11521801 aatcgcggatcatagaaaatagctgtttgttcaaattccgctatgatacagtg 11521853  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 16495167 - 16495123
Alignment:
Q  58 aagtcaatcgtggatcacagaaaatagtagtttgttcaaattctg 102  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||    
T  16495167 aagtcaaccgtggatcgcagaaaatagtggtttgttcaaattctg 16495123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 38596850 - 38596787
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcg 123  Q
    ||||||| |||| | || ||||||| |||||||||||||||||||| | |||||||||| ||||    
T  38596850 gtcaatcatggaccgcaaaaaatagcagtttgttcaaattctgctacgttacagtgctatagcg 38596787  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 32427058 - 32427099
Alignment:
Q  77 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  32427058 gaaaatagtagtttgttcaaattctgccatgtgacagtgcta 32427099  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 47213474 - 47213519
Alignment:
Q  71 atcacagaaaatagtagtttgttcaaattctgctatgctacagtgc 116  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||||    
T  47213474 atcacagaaaattgaagtttgttcaaattctgttatgcaacagtgc 47213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 12909574 - 12909614
Alignment:
Q  86 agtttgttcaaattctgctatgctacagtgctagagcgttg 126  Q
    |||||||||||||||||||| ||||||||| || |||||||    
T  12909574 agtttgttcaaattctgctacgctacagtgttatagcgttg 12909614  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 19984279 - 19984323
Alignment:
Q  61 tcaatcgtggatcacagaaaatagtagtttgttcaaattctgcta 105  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||    
T  19984279 tcaattgtggatcgcagaaaatagttgtttgctcaaattctgcta 19984323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 45554117 - 45554157
Alignment:
Q  77 gaaaatagtagtttgttcaaattctgctatgctacagtgct 117  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  45554117 gaaaatagtggtttgctcaaattctgccatgctacagtgct 45554157  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 45599615 - 45599671
Alignment:
Q  59 agtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtg 115  Q
    |||||||||||||||| |||||||||| | ||| | |||||||||||| || |||||    
T  45599615 agtcaatcgtggatcatagaaaatagtgggttggtaaaattctgctatactgcagtg 45599671  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 10604 - 10657
Alignment:
Q  61 tcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagt 114  Q
    ||||| ||| ||| ||||||||||  |||||||||||||||||||||| |||||    
T  10604 tcaattgtgaatcgcagaaaatagcggtttgttcaaattctgctatgcaacagt 10657  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 507873 - 507832
Alignment:
Q  77 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 118  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  507873 gaaaatagcagtttgtttaaattctgctatgttacagtgcta 507832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 3247446 - 3247406
Alignment:
Q  77 gaaaatagtagtttgttcaaattctgctatgctacagtgct 117  Q
    ||||| ||| |||||||||||||| ||||||||||||||||    
T  3247446 gaaaacagtggtttgttcaaattccgctatgctacagtgct 3247406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 20869909 - 20869965
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgc 116  Q
    ||||||||  || ||| |||||||| |||||||||||||||||| | ||||||||||    
T  20869909 gtcaatcgcagaacacggaaaatagcagtttgttcaaattctgcaacgctacagtgc 20869965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 23137478 - 23137522
Alignment:
Q  78 aaaatagtagtttgttcaaattctgctatgctacagtgctagagc 122  Q
    |||||| |||||||||||||||||||||  | |||||||||||||    
T  23137478 aaaataatagtttgttcaaattctgctactcaacagtgctagagc 23137522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 669 - 617
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctaca 112  Q
    |||| ||| ||||||| || |||||| ||||||||||||| ||||||||||||    
T  669 gtcagtcgcggatcacggataatagtggtttgttcaaattgtgctatgctaca 617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 651 - 695
Alignment:
Q  60 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgct 104  Q
    ||||||||| |||||||||||||||| | ||||||||||| ||||    
T  651 gtcaatcgtcgatcacagaaaatagttgattgttcaaattatgct 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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