View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_134 (Length: 334)

Name: NF10855A_low_134
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_134
NF10855A_low_134
[»] chr4 (10 HSPs)
chr4 (25-180)||(37179999-37180154)
chr4 (25-180)||(37181583-37181738)
chr4 (25-180)||(37189700-37189855)
chr4 (25-176)||(37187682-37187833)
chr4 (243-334)||(37180220-37180311)
chr4 (243-334)||(37189543-37189634)
chr4 (128-176)||(38704220-38704268)
chr4 (243-315)||(37181445-37181517)
chr4 (244-331)||(37187901-37187988)
chr4 (243-315)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (40-158)||(27096701-27096816)
chr5 (40-158)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 37179999 - 37180154
Alignment:
Q  25 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179999 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37180098  T
Q  125 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180099 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37180154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 37181738 - 37181583
Alignment:
Q  25 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181738 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37181639  T
Q  125 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181638 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37181583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 37189855 - 37189700
Alignment:
Q  25 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189855 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37189756  T
Q  125 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189755 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 37187682 - 37187833
Alignment:
Q  25 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  37187682 gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag 37187781  T
Q  125 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 176  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37187782 ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaagg 37187833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 37180220 - 37180311
Alignment:
Q  243 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtt 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180220 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtt 37180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 37189634 - 37189543
Alignment:
Q  243 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtt 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37189634 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaaggatttgaatattgccattgatagtt 37189543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
Q  128 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704220 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 38704268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 37181517 - 37181445
Alignment:
Q  243 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttg 315  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||||  ||||||||||||    
T  37181517 caaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttg 37181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 37187901 - 37187988
Alignment:
Q  244 aaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgata 331  Q
    |||||||| |||||||||||||||||| |||| || |||||||| |||||||||| | ||||||||||||||  |  |||||||||||    
T  37187901 aaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatgccattgata 37187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 38704293 - 38704369
Alignment:
Q  243 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg 315  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||||| |||||||||    
T  38704293 caaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg 38704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
Q  40 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 139  Q
    |||||||||| |||||||||||||| |||||||   || |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27096816 aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg 27096720  T
Q  140 gaggaagatttccttgagg 158  Q
    |||||| ||| ||||||||    
T  27096719 gaggaacattaccttgagg 27096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
Q  40 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 139  Q
    |||||||||| |||||||||||||| |||||||   || || ||||  || |||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27103119 aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg 27103023  T
Q  140 gaggaagatttccttgagg 158  Q
    |||||| ||| ||||||||    
T  27103022 gaggaacattaccttgagg 27103004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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