View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_139 (Length: 329)

Name: NF10855A_low_139
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_139
NF10855A_low_139
[»] chr1 (4 HSPs)
chr1 (17-329)||(11780118-11780431)
chr1 (139-311)||(10424593-10424765)
chr1 (141-311)||(1624838-1625008)
chr1 (228-287)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (22-323)||(17158540-17158845)
[»] chr2 (1 HSPs)
chr2 (22-329)||(12101765-12102070)
[»] chr6 (4 HSPs)
chr6 (133-329)||(14977618-14977814)
chr6 (25-196)||(11776308-11776482)
chr6 (140-196)||(9352421-9352477)
chr6 (148-196)||(24353638-24353686)
[»] chr5 (4 HSPs)
chr5 (133-311)||(5781902-5782080)
chr5 (25-311)||(19069420-19069709)
chr5 (202-299)||(17763963-17764060)
chr5 (139-196)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (139-306)||(16311632-16311799)
chr3 (139-306)||(18488416-18488583)
chr3 (139-306)||(18492626-18492793)
chr3 (128-291)||(19829018-19829181)
chr3 (139-277)||(16314023-16314161)
chr3 (139-277)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (139-295)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 11780431 - 11780118
Alignment:
Q  17 ggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctcctagctacgccagtgtttgaaat 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  11780431 ggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaat 11780332  T
Q  117 tgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 215  Q
    |||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780331 tgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 11780232  T
Q  216 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780231 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 11780132  T
Q  316 gttgagcaagatga 329  Q
    |||||||| |||||    
T  11780131 gttgagcacgatga 11780118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 311  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 311
Target Start/End: Complemental strand, 1625008 - 1624838
Alignment:
Q  141 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 240  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  241 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 311  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  228 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 287  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 323
Target Start/End: Complemental strand, 17158845 - 17158540
Alignment:
Q  22 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctcctagctacgccagtgtttgaaattgttt 121  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  ||||||  || |||||||||||||||||||||||||    
T  17158845 tcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgttt 17158746  T
Q  122 cccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactc 217  Q
    ||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||     
T  17158745 cctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactg 17158646  T
Q  218 caacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgt 317  Q
    | || ||||||||||||||||| ||||||||||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| |||||||||||||||    
T  17158645 cgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgt 17158546  T
Q  318 tgagca 323  Q
    | ||||    
T  17158545 taagca 17158540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 12101765 - 12102070
Alignment:
Q  22 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctcctagctacgccagtgtttgaaattgttt 121  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| |  | ||| || | ||||||||||||| |||    
T  12101765 tcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattattt 12101864  T
Q  122 cccggtt---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactcc 218  Q
    |||   |   ||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | ||||||||||||| |    
T  12101865 ccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggctgacgatgttactac 12101964  T
Q  219 aacgctctcggatgatgtggaacata----atcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaat 314  Q
     |  |         ||||||||||||    ||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12101965 gatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaat 12102055  T
Q  315 tgttgagcaagatga 329  Q
    ||||||||| |||||    
T  12102056 tgttgagcacgatga 12102070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 329
Target Start/End: Original strand, 14977618 - 14977814
Alignment:
Q  133 gatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatg 232  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     ||||||||||||||| | ||||| ||  |||    
T  14977618 gatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctacgctatcttatg 14977717  T
Q  233 atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcaagatga 329  Q
    ||||||||||||||||||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| |||| |||||    
T  14977718 atgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtttagcatgatga 14977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  25 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctcctagctacgccagtgtttgaaattgtttccc 124  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| |||  |  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  125 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 196  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  140 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 196  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  148 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 196  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 5782080 - 5781902
Alignment:
Q  133 gatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatg 232  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   || || || ||||    
T  5782080 gatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttacactttctgatg 5781981  T
Q  233 atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 311  Q
    |||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||    
T  5781980 atgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc 5781902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 19069709 - 19069420
Alignment:
Q  25 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctcctagctacgccagtgtttgaaattgtttccc 124  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | |||||||||  |  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  125 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 221  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  222 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 311  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
Q  202 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt 299  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||    
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt 17764060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 196  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 306
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 306  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 306
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 306  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 306
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 306  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  128 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 227  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  228 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 291  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 277
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtc 277  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 277
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtc 277  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 295
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  139 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 238  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  239 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 295  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University