View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_14 (Length: 488)
Name: NF10855A_low_14
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 22277774 - 22278221
Alignment:
| Q |
20 |
cacatactgaatatcgactgcccctgtctaactgccaatttcatgaatctgctaagtcatcccgcacctacaggttagtaggaaaagtgcaacactccct |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22277774 |
cacatattgaatatcgactgcccctgtctaactgccaatttcatgaatttgctaagtcatcccgcacctacaggttagtaggaaaagtgcaacactccct |
22277873 |
T |
|
| Q |
120 |
aaccaactcctcctctcaagccaacaaacgacatctccaccgctaatcctccccaccctcatcccaacccaaaacaaccatatatgcaattgaaacccac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22277874 |
aaccaactcctcctctcaagccaacaaacgacatctccaccgccaatcctccccaccctcatctcaacccaaaacaaccatatatgcaattgaaacccac |
22277973 |
T |
|
| Q |
220 |
ctatcctttgccaaatcaaaaagccgtctaaacataaccaaaaatgaaactccccccaaccgcctatcaagtcaaaaatatgtatttgcctcgttaccca |
319 |
Q |
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||||||||||||||||||||||||||||||||| ||| | |||||| |||| ||||||||| ||||||||| ||||||||||||| |||||| ||||||| |
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| T |
22277974 |
ctatcctttgccaaatcaaaaagccgtctaaacctaatccaaaatggaacttcccccaaccacctatcaagccaaaaatatgtatctgcctcattaccca |
22278073 |
T |
|
| Q |
320 |
ccctacacaccacattctcattaaaccaactccctccctgaaaaccgacatcatcacgaatcctcacgatatctttccaccaactcgaccctcccagact |
419 |
Q |
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|||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22278074 |
ccctacgcaccacattctcattgaatcaactccctccctgaaaaccgacatcatcacgaatcctcacgatatccttccaccaactcgaccctcccagacc |
22278173 |
T |
|
| Q |
420 |
cccctccttcacccacccactttatacttcgtacctcgccacagacgt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278174 |
cccctccttcacccacccactttatacttcgtacctcgccacagacgt |
22278221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 20562727 - 20562800
Alignment:
| Q |
330 |
cacattctcattaaaccaactccctccctgaaaaccgacatcatcacgaatcctcacgatatctttccaccaac |
403 |
Q |
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||||||||| | ||||||||||||||||| |||| | ||| |||| |||||||| | ||||| |||||||||| |
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| T |
20562727 |
cacattctcctcaaaccaactccctccctcaaaatcaacaccatcctgaatcctccccatatccttccaccaac |
20562800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 414
Target Start/End: Complemental strand, 7616774 - 7616673
Alignment:
| Q |
313 |
ttacccaccctacacaccacattctcattaaaccaactccctccctgaaaaccgacatcatcacgaatcctcacgatatctttccaccaactcgaccctc |
412 |
Q |
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||||||||| |||| ||||||||||| | ||||||| ||||||||| ||| || ||||| |||| ||||||||| |||| |||| | |||| ||||||| |
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| T |
7616774 |
ttacccaccttacaaaccacattctcctcaaaccaaatccctccctaaaagccaacatcgtcacaaatcctcaccctatccttcctctaacttgaccctc |
7616675 |
T |
|
| Q |
413 |
cc |
414 |
Q |
| |
|
|| |
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|
| T |
7616674 |
cc |
7616673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 2387625 - 2387662
Alignment:
| Q |
114 |
ctccctaaccaactcctcctctcaagccaacaaacgac |
151 |
Q |
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|||||| |||||||||||||| |||||||||||||||| |
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| T |
2387625 |
ctccctgaccaactcctcctcccaagccaacaaacgac |
2387662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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