View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_140 (Length: 329)
Name: NF10855A_low_140
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_140 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 30316047 - 30315727
Alignment:
| Q |
5 |
tagtagcatagatgagtattatgagnnnnnnn-tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaa-ggtggaact |
102 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30316047 |
tagtagcatagatgagtattatgagaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaact |
30315948 |
T |
|
| Q |
103 |
ctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaag |
202 |
Q |
| |
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||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30315947 |
ctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaag |
30315848 |
T |
|
| Q |
203 |
ctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315847 |
ctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg |
30315748 |
T |
|
| Q |
303 |
attctttagtagcctctcaac |
323 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
30315747 |
attctttagtagactctcaac |
30315727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 37 - 323
Target Start/End: Complemental strand, 30305147 - 30304861
Alignment:
| Q |
37 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaggtggaactctagttatagttacaagataatgacgttttattc |
136 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattc |
30305048 |
T |
|
| Q |
137 |
tttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttct |
236 |
Q |
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| ||||| ||| |||||||| ||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30305047 |
atcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtct |
30304948 |
T |
|
| Q |
237 |
ctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30304947 |
ctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30304861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 48 - 323
Target Start/End: Complemental strand, 30287462 - 30287193
Alignment:
| Q |
48 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcacta |
147 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||| |||| || |
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|
| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaaggaggaactctagtta------caagataatgccgttttattcttttctcatta |
30287369 |
T |
|
| Q |
148 |
tgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgac |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30287368 |
tgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgac |
30287269 |
T |
|
| Q |
248 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30287268 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30287193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 323
Target Start/End: Complemental strand, 30300349 - 30300069
Alignment:
| Q |
37 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaggtggaactctagttatagttacaagataatgacgttttattc |
136 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| || ||||||| || |||||||||| |
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|
| T |
30300349 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaaggtggaactctagata------caagatattgccgttttattc |
30300256 |
T |
|
| Q |
137 |
tttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttct |
236 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||| |
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| T |
30300255 |
tctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtct |
30300156 |
T |
|
| Q |
237 |
ctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30300155 |
ctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30300069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 48 - 323
Target Start/End: Complemental strand, 30292485 - 30292227
Alignment:
| Q |
48 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcacta |
147 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
30292386 |
T |
|
| Q |
148 |
tgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgac |
247 |
Q |
| |
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|||||| || |||||||| |||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30292385 |
tgagct---------tagagcatacaagcataataag--------cattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcgac |
30292303 |
T |
|
| Q |
248 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30292302 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30292227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 46810582 - 46810518
Alignment:
| Q |
259 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |
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|
| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaac |
46810518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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