View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_141 (Length: 328)
Name: NF10855A_low_141
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_141 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 1676249 - 1676552
Alignment:
| Q |
7 |
cgaagaatattgaaacaagcggtgattatataaaggttttttccccatatttttattttgtttaaagaactatactaaataaactaattatgttacaaca |
106 |
Q |
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| T |
1676249 |
cgaagaatattgaaacaagtgatgattatatagaggttttttccccatatttttattttgtttaaagaactatactaaataaactaattatgttacaaca |
1676348 |
T |
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| Q |
107 |
ataaagaacaataaaactaattaagcaagaactcaacttaataaaaacaccacgaaaacattatgttacaactgaaaagaacaacctcgagatgggtaag |
206 |
Q |
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| T |
1676349 |
ataaagaacaataaaactaattaatcaagaactcaacttaataaaaacaccacgaaaacattatattacaactgaaaagaacaacctcgagatgggtaag |
1676448 |
T |
|
| Q |
207 |
acccaactcccagttataagccatgtttataattatcttttaaatatgttgtttgtttttgaaaaatagtaattttttgtgattatcatcacatatttac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1676449 |
acccaactcccagttataagccatgtttataattatctttaaaatatgttgtttgtttttgaaaaatagtaattttttgtgatcatcatcacatatttac |
1676548 |
T |
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| Q |
307 |
tttt |
310 |
Q |
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|||| |
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| T |
1676549 |
tttt |
1676552 |
T |
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