View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_144 (Length: 326)
Name: NF10855A_low_144
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_144 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 41792983 - 41793298
Alignment:
| Q |
12 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
111 |
Q |
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| T |
41792983 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
41793082 |
T |
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| Q |
112 |
cattttcgaaacaaccaacctactagaaacacgcttcc-accaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
210 |
Q |
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| T |
41793083 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
41793182 |
T |
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| Q |
211 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatcaggatcacggcggcgcgtgtcagaaatctcgataatcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41793183 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
41793282 |
T |
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| Q |
311 |
tctcctcatctccagc |
326 |
Q |
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|||||||||||||||| |
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| T |
41793283 |
tctcctcatctccagc |
41793298 |
T |
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