View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_158 (Length: 308)
Name: NF10855A_low_158
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_158 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 32907073 - 32907369
Alignment:
| Q |
12 |
atgaagttgacaaagaatgctaaacagatatgcaaacaacagcctcctcaaaggcgatagtccaattattgacaaacacggccagaatgtcgcgatacat |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32907073 |
atgaagttaacaaagaatgctaaacagatatgcaaacaacagcctcctcaaaggtgatagtccaattattgacaaacacggccagaatgtcgcgatacat |
32907172 |
T |
|
| Q |
112 |
agcctcgccaacaacaaacttcgaaaacaactacgttgcgaagatgggacaaatgaagccaaagaaataactccaatccattgagccaccccacataagt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32907173 |
agcctcgccaacaacaaacttccgaaacaactacgttgcgaagatgggacaaatgaagccaaagaaataactccaatccattgagccaccccacataagt |
32907272 |
T |
|
| Q |
212 |
gttttaggtttctgctgaaactgtacaccgaaactgaaaatataaaattcaatacaccacagaaagagccaaaacagatatgaatgaataaatcaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32907273 |
cttttaggtttctgctgaaactgtacaccgaaactgaaaatataaaattcaatacaccacagaaagagccaaaacagatatgaatgaataaatcaat |
32907369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 32906777 - 32906839
Alignment:
| Q |
18 |
ttgacaaagaatgctaaacagatatgcaaacaa-cagcctcctcaaaggcgatagtccaatta |
79 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||| |||||||||| || ||||||| |
|
|
| T |
32906777 |
ttgacaaagaatgataaacaaatatgcaaacaataagcctcatcaaaggcgagaggccaatta |
32906839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University