View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_160 (Length: 308)
Name: NF10855A_low_160
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_160 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 51184543 - 51184241
Alignment:
| Q |
1 |
agacagtagatattgatttgtatgaaagaaaagattagacaattaagactagtttggttttatactgcgactttgcaggtttccaagacagtggatattg |
100 |
Q |
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| T |
51184543 |
agacagtagatattgatttttatgaaagaaaagattagacaattaagactagtttggttttatactgtgactttgcaggtttccaagacagtagatattg |
51184444 |
T |
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| Q |
101 |
taaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttga |
200 |
Q |
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| T |
51184443 |
taaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttga |
51184344 |
T |
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| Q |
201 |
gcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagcctcctatgaaaaagtgagtgta |
300 |
Q |
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| T |
51184343 |
gcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtgagtgta |
51184244 |
T |
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| Q |
301 |
ttt |
303 |
Q |
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||| |
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| T |
51184243 |
ttt |
51184241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 14172579 - 14172870
Alignment:
| Q |
12 |
attgatttgtatgaaagaaaagattagacaattaagactagtttggttttatactgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaa |
111 |
Q |
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| T |
14172579 |
attgatctgtatgaaaggaaagactaaacaattaagactattttggttttatactgcgattttgcaggtttccaagacagtagatattgtaaaggcgaaa |
14172678 |
T |
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| Q |
112 |
gggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttgagcttttggaga |
211 |
Q |
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| T |
14172679 |
gggggaaaggttacaagagaaccagggtctgtcataggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttaagcttttggaga |
14172778 |
T |
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| Q |
212 |
gaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagcctcctatgaaaaagtgagtgtattt |
303 |
Q |
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| T |
14172779 |
gaagaactactcgtgaacccttatgcaaagtgatgcttcgagtaggtgaccttgatcgtgtcatagccttctatgaaaaagtgagtgtattt |
14172870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 48010932 - 48011035
Alignment:
| Q |
200 |
agcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagcctcctatgaaaaagtgagtgt |
299 |
Q |
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| T |
48010932 |
agcttttggggtgaagacctgctcgcgaacccctatgcaaagtgatgcttcaagtaggcggccttgatcgtgtcgtagccttctatgaataagtgagttt |
48011031 |
T |
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| Q |
300 |
attt |
303 |
Q |
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|||| |
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| T |
48011032 |
attt |
48011035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 303
Target Start/End: Original strand, 807 - 1050
Alignment:
| Q |
60 |
ttatactgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctata |
159 |
Q |
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| T |
807 |
ttatactgtgatttttcaggttgccaagacggtaaatattgtaaaggaaaaatggggaaaggttatgagagaactggagcctgttaaagatggttctaca |
906 |
T |
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| Q |
160 |
gtaactgcttccgttgaagatcctagtggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcg |
259 |
Q |
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| T |
907 |
gtaactgcttttattgaagatcctagtggtgataggtttgagcttttggggagaagacttactcgtgaacccttatgcaaagtgatgcttcaagcagaca |
1006 |
T |
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| Q |
260 |
accttgatcgtgtcatagcctcctatgaaaaagtgagtgtattt |
303 |
Q |
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| T |
1007 |
accttgattgtgtcatagccttctatgaaaaagtgagtgtattt |
1050 |
T |
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