View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_162 (Length: 303)
Name: NF10855A_low_162
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_162 |
 | |
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| [»] chr6 (11 HSPs) |
| |
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| [»] scaffold0133 (3 HSPs) |
| |
|
| [»] scaffold0256 (1 HSPs) |
| | |
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| [»] scaffold0144 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 16787839 - 16787554
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787839 |
acatcaatggatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
16787740 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787739 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
16787640 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787639 |
catctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
16787554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 16797041 - 16796760
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||| || ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
16797041 |
acatcaatggatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattg |
16796942 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796941 |
tcattgaggccatgttttactttctgcgctgtttttcctaaggattttgaaatggtgaaggaacatctcattcatctttggatggctaatggacttgtta |
16796842 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||||||| | ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16796841 |
catctagaggtaatttacagatggagcatgttggtaatgggatatgggatgaattataccaaaggtcattttttcaagaagt |
16796760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 16780971 - 16780686
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||| ||| |||||||| | ||||||||||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
16780971 |
acatcaatggctttctgtaaaggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttg |
16780872 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16780871 |
tccttaaggccgtgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgtta |
16780772 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16780771 |
catctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
16780686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 16987326 - 16987041
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
16987326 |
acatcaatggatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattg |
16987227 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16987226 |
tcactaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcatctttggatggctaatggacttgtta |
16987127 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||| |||||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
16987126 |
catctagaggtaatttacagatggagcatgttggtgatgaggtatggaatcaattatggcaaagatcattttttcaagaagttaaa |
16987041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 16657884 - 16657603
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| |||| ||| | | | ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
16657884 |
acatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattg |
16657785 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| |
|
|
| T |
16657784 |
tcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggataaggaagaactcattaaactttggatggctaatggacttgtta |
16657685 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16657684 |
tatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagt |
16657603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 16868289 - 16868568
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||||| | || ||| | | | ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
16868289 |
acatcaatggacttctgtggtggaaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattg |
16868388 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
16868389 |
tcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggaaaaggaatttttcattcaactttggatggctaatggacttgtta |
16868488 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16868489 |
catctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaa |
16868568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 17069378 - 17069097
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| || || | ||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
17069378 |
acatcaatggatttctgtggtggaaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattg |
17069279 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||||||||||||||| ||||| | ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
17069278 |
tcattgaggccatgttttactttctgtgttgtttttcctaaggattttgtaatggtgaaggaaaggctcattcatctttggatggctaatggatttgtta |
17069179 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17069178 |
catctagaggtaatttacagatggagcatgttggtaatgagatatgggatgaattataccaaaggtcattttttcaagaagt |
17069097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 18806485 - 18806677
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
18806485 |
acatcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaatta |
18806584 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
210 |
Q |
| |
|
|| |||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
18806585 |
tcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
18806677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 18873479 - 18873671
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||||| ||| | ||||| |||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
18873479 |
acatcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgtattgagactcagctactttaatttgaaatta |
18873578 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
210 |
Q |
| |
|
|| |||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
18873579 |
tcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
18873671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 16843584 - 16843397
Alignment:
| Q |
112 |
aaattgtccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggac |
211 |
Q |
| |
|
||||| || |||| |||||||||||| || || ||||| ||||| || ||||||| ||||||||||||| || | ||||||||||||||||| |||||| |
|
|
| T |
16843584 |
aaattatcattgaagccatgttttacattttgtgctgtatttcctaaagattttgtaatggtgaaggaagatgtaattcatctttggatggcaaatggat |
16843485 |
T |
|
| Q |
212 |
ttgttacatctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
|| || | || |||||||| ||| |||||||||| || || |||||||| ||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
16843484 |
ttatttcctccagaggaaatttagagatggaggaggttggcaatgaggtgtggaatgaactataccagagatcattttttcaagaagt |
16843397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 18870507 - 18870676
Alignment:
| Q |
130 |
tgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaa |
229 |
Q |
| |
|
||||||||||| || | |||||||| |||||||||||||||||||||||| | || || ||||||||| || |||||||| | | | || | |||| |
|
|
| T |
18870507 |
tgttttaccttttgtgaggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttgactaatggattcatctcttccattggaa |
18870606 |
T |
|
| Q |
230 |
acttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
| ||| || ||||| |||| ||| |||| || |||||||||||||| | || ||||||||||||||||| |
|
|
| T |
18870607 |
atttagaggtggagcatgttggtcatgaagtgtggaatgaattatatgagagatcattttttcaagaagt |
18870676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 12721 - 12436
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
12721 |
acatcaatggatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattg |
12622 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12621 |
tcattgaggccatgttttactttctgtgctgtttttcccaaagattatgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgtta |
12522 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
12521 |
catctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattatttgaagaagttaaa |
12436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 8379 - 8094
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
8379 |
acatcaatggatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattg |
8280 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||| ||||||||| | ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8279 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaaaatctcattcatctttggatggctaatggtcttgtta |
8180 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
||||||||||||| |||||||||||| | || ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||| |
|
|
| T |
8179 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcattttttcaagaagttaaa |
8094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 17927 - 17646
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
17927 |
acatcaatggctttctgtaaaggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcg |
17828 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
||||||||||| |||||||| || || |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
17827 |
tccttgaggccctgttttactttttgtactgtttttcctaaggattttgaaatggtgaaggaaaatatcattccattttggatggctaatggacttgtta |
17728 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
17727 |
catcaagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagt |
17646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 38939648 - 38939929
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
38939648 |
acatcaatggttttctgtaaaggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattg |
38939747 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38939748 |
tccttgaggccatgttttaatttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgtta |
38939847 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38939848 |
catcaagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
38939929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 7053555 - 7053840
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||||| |||||||| |||| |||||||||| |||||| || ||||||| ||| ||||||||| |
|
|
| T |
7053555 |
acatcaatggctttctataaaggaaagcaagttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattg |
7053654 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
| |||||||| |||||| | || || |||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
7053655 |
ccattgaggccttgtttttctttttgtgctgtttttcccaaagattttgagatacataaggaatgcctcattcatctttggatggctaatggacttctta |
7053754 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
||||||||||||| |||||||||||| | | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
7053755 |
catctagaggaaatttacagatggagcttcttggtaatgaggtatggaatgaattatatcaaagatcattttttcaagaagttaaa |
7053840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 299
Target Start/End: Complemental strand, 9002 - 8742
Alignment:
| Q |
39 |
ggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtccttgaggccatgttttacc |
138 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9002 |
ggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttact |
8903 |
T |
|
| Q |
139 |
ttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaaacttacaga |
238 |
Q |
| |
|
|| || ||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8902 |
ttttgtgctgtttttcctaaagattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaatttacaga |
8803 |
T |
|
| Q |
239 |
tggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8802 |
tggagcatgttggtaatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagt |
8742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 37362 - 37081
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| |||| ||| | | ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
37362 |
acatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattg |
37263 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|| ||||||||||||||||| || || ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37262 |
tcattgaggccatgttttactttttgtgctgtttttcctaaggattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttg |
37163 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagt |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37162 |
catctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagt |
37081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 13377963 - 13377679
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || ||||||| || ||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
13377963 |
acatcaatggctttctgtaaaggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattg |
13377864 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
217 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13377863 |
tccttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattctactttggatggctaatggacttgtta |
13377764 |
T |
|
| Q |
218 |
catctagaggaaacttacagatggaggatgtcggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaa |
303 |
Q |
| |
|
||||||||||||||||||| | |||| |||| ||||||||||||||| |||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
13377763 |
catctagaggaaacttaca-acggagcatgttggtaatgaggtatgggatgagttatgccaaagatcattttttcaagaagttaaa |
13377679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 9225 - 9033
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || ||| ||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9225 |
acatcaatggctttctgtaaaggacagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaatta |
9126 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
210 |
Q |
| |
|
|| ||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| || || ||||||||| ||||||||||| |
|
|
| T |
9125 |
tcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagcactgatccatctttggttggctaatgga |
9033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 4544 - 4352
Alignment:
| Q |
18 |
acatcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
117 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||||| ||| | ||||| |||||||||||| |||||||||||| ||||||||||| || ||||| |
|
|
| T |
4544 |
acatcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtttgttttgagactcagctactttaatttaaaatta |
4445 |
T |
|
| Q |
118 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
210 |
Q |
| |
|
|| ||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
4444 |
tcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
4352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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