View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_167 (Length: 300)

Name: NF10855A_low_167
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_167
NF10855A_low_167
[»] chr3 (3 HSPs)
chr3 (1-294)||(15513433-15513727)
chr3 (32-74)||(15514277-15514319)
chr3 (196-281)||(12767337-12767422)
[»] chr5 (4 HSPs)
chr5 (224-294)||(9962954-9963024)
chr5 (223-294)||(18398599-18398670)
chr5 (200-294)||(31536419-31536513)
chr5 (196-281)||(36289589-36289674)
[»] chr2 (7 HSPs)
chr2 (196-294)||(12670743-12670841)
chr2 (197-281)||(10633364-10633448)
chr2 (179-294)||(30481661-30481776)
chr2 (240-295)||(34557292-34557347)
chr2 (240-294)||(33710553-33710607)
chr2 (196-265)||(4422823-4422892)
chr2 (196-252)||(21488865-21488921)
[»] chr8 (6 HSPs)
chr8 (223-276)||(9030583-9030636)
chr8 (238-294)||(37616265-37616321)
chr8 (193-294)||(8238727-8238828)
chr8 (240-281)||(10340283-10340324)
chr8 (223-279)||(10340211-10340267)
chr8 (225-253)||(36203407-36203435)
[»] chr7 (5 HSPs)
chr7 (198-253)||(11329505-11329560)
chr7 (180-275)||(25690712-25690807)
chr7 (196-294)||(16780773-16780871)
chr7 (223-294)||(41195668-41195739)
chr7 (223-291)||(30357895-30357963)
[»] chr4 (5 HSPs)
chr4 (179-294)||(40423307-40423422)
chr4 (240-287)||(43115575-43115622)
chr4 (245-294)||(53449054-53449103)
chr4 (195-253)||(25844267-25844325)
chr4 (223-271)||(40421951-40421999)
[»] chr1 (3 HSPs)
chr1 (241-294)||(39126966-39127019)
chr1 (240-294)||(25485009-25485063)
chr1 (218-294)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (238-294)||(31363-31419)
[»] chr6 (1 HSPs)
chr6 (240-294)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 15513727 - 15513433
Alignment:
Q  1 atgaagtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513727 atgaggtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 15513628  T
Q  101 gttcttcttcctttgagaattactcatttccttaatttaaggtgatttaactcatgttcggca-nnnnnnnnnnacaataagttaattcatgctagcact 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||           | ||||||||||||||||||||||||    
T  15513627 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcacgttcggcatttttttttttataataagttaattcatgctagcact 15513528  T
Q  200 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513527 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 15513433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
Q  32 catcaacctaggttgtgatacaaacataatagtagacccttac 74  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15514319 catcaacctaggttgcgatacaaacataatagtagacccttac 15514277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 12767337 - 12767422
Alignment:
Q  196 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 281  Q
    ||||| ||||||||||| |   |||| |||||||||||||  | |||||||||||||  | ||||||||| ||| |||||||||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcgtgagttaactcaagttgaaaaatg 12767422  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 9962954 - 9963024
Alignment:
Q  224 aaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    |||||||||||| |||||||||||||||||  |||||||||| | ||| ||||||||| ||||||| ||||    
T  9962954 aaaagtgattgaatcaatcttaaaagtgtcattgtgagttaacttacgctgaaaaatgccgaacgtaagtt 9963024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 18398599 - 18398670
Alignment:
Q  223 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||| |||  | |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||    
T  18398599 aaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagtt 18398670  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 31536419 - 31536513
Alignment:
Q  200 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||| ||||||  |||| ||||| | |||||  | ||||||||| | || ||||||||||| || |||| |||||||| |||||||||||    
T  31536419 tttaagatcagttaaaccgacttaaaaaattattgaaccgatcttaaaaatatcagtgtgagttaactctcgttaaaaaatgttgaacgtgagtt 31536513  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 36289674 - 36289589
Alignment:
Q  196 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 281  Q
    ||||||||||||   ||||| ||||| ||||||||||| | || ||||||||||||||  |||||  ||| ||||| |||||||||    
T  36289674 cacttttaagattcattaaactgacttaaaaagtgattaaatcgatcttaaaagtgtcaatgtgaactaactcacgctgaaaaatg 36289589  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 12670841 - 12670743
Alignment:
Q  196 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||||||||| |   | || ||||| |||||||  | |||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcgaatgtgagtt 12670743  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 10633448 - 10633364
Alignment:
Q  197 acttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 281  Q
    |||||||||||||||| ||  |||| ||||| ||||||| |||||| | ||||  ||  |||||||||| |||||||||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaatcaatcctcaaaggatcactgtgagttaactcacgttgaaaaatg 10633364  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 30481776 - 30481661
Alignment:
Q  179 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 278  Q
    ||||||||| |  |||| ||||||||||| |||| || || || ||||| | |||||    |||||||||||| | ||||||||||| ||||| | ||||    
T  30481776 aagttaatttacactagaacttttaagataggttgaattggcttaaaaaattattgaactgatcttaaaagtgccagtgtgagttaactcacgctaaaaa 30481677  T
Q  279 atgtcgaacgtgagtt 294  Q
    ||||||||| ||||||    
T  30481676 atgtcgaacatgagtt 30481661  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 34557347 - 34557292
Alignment:
Q  240 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagttt 295  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||| || ||||||    
T  34557347 atcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagcgagagttt 34557292  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 33710607 - 33710553
Alignment:
Q  240 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    |||||||||||||| | || |||||| ||||| ||||||||||||||||| ||||    
T  33710607 atcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagtt 33710553  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 4422823 - 4422892
Alignment:
Q  196 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaa 265  Q
    ||||||||||||||||| |   |||| |||||||||||||| | |||| ||||||| ||| |||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaa 4422892  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 21488921 - 21488865
Alignment:
Q  196 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgt 252  Q
    ||||||||||||||||| || ||||| ||||| |||||||  | |||||||||||||    
T  21488921 cacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgt 21488865  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 9030636 - 9030583
Alignment:
Q  223 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaa 276  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  9030636 aaaaagtgattgaatcgatcttaaaagtgtcggtgtgagttaactcacgctgaa 9030583  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 37616321 - 37616265
Alignment:
Q  238 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    |||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||    
T  37616321 caatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagtt 37616265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 8238828 - 8238727
Alignment:
Q  193 tagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgag 292  Q
    |||||||||||||||||||| |   ||||||||||||||||||    |||| ||||||||| | ||||||||| |  || |||||||| |||| ||||||    
T  8238828 tagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaatatcgagcgtgag 8238729  T
Q  293 tt 294  Q
    ||    
T  8238728 tt 8238727  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 10340283 - 10340324
Alignment:
Q  240 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 281  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  10340283 atcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 10340267 - 10340211
Alignment:
Q  223 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaa 279  Q
    ||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||    
T  10340267 aaaaaatgattgaatcgatctaaaaagtgtcagtgtgagttaactcacgctgaaaaa 10340211  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 36203407 - 36203435
Alignment:
Q  225 aaagtgattgagtcaatcttaaaagtgtc 253  Q
    |||||||||||||||||||||||||||||    
T  36203407 aaagtgattgagtcaatcttaaaagtgtc 36203435  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  198 cttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 253  Q
    ||||||||||||||||||  |||| |||||||||| || |||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 25690807 - 25690712
Alignment:
Q  180 agttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttga 275  Q
    ||||||||||||||  ||||||||||||||||| ||  | || |||||||||||||  | |||| ||||||||| | ||||||||| ||| |||||    
T  25690807 agttaattcatgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactcatgttga 25690712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 16780773 - 16780871
Alignment:
Q  196 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||||||||| ||  |||| |||||||||||||  | |||||||||||| | | || |||||| ||| | ||||||||||||| | ||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagtt 16780871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 41195739 - 41195668
Alignment:
Q  223 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||||| |||| |||||||||||| | ||||||||| | ||| | ||||||| ||| ||||||||    
T  41195739 aaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaactaacgctaaaaaatgccgagcgtgagtt 41195668  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 30357895 - 30357963
Alignment:
Q  223 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtga 291  Q
    ||||||||| ||| ||||||| |||||||||||||||| |||  |  || ||||||||| |||||||||    
T  30357895 aaaaagtgagtgaatcaatctaaaaagtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtga 30357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 40423307 - 40423422
Alignment:
Q  179 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 278  Q
    ||||||| |||||||  ||||||||||||  ||| ||  |||| |||||||||||||  | ||||||||| |||| | ||||||||||||||| | ||||    
T  40423307 aagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaattcacgcttaaaa 40423406  T
Q  279 atgtcgaacgtgagtt 294  Q
    |||  || ||||||||    
T  40423407 atgctgagcgtgagtt 40423422  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 43115622 - 43115575
Alignment:
Q  240 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaac 287  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43115622 atcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaac 43115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 53449103 - 53449054
Alignment:
Q  245 aaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  53449103 aaaagtgtcggcgtgagttaactcacattgaaaaatgtcgaatgtgagtt 53449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 25844267 - 25844325
Alignment:
Q  195 gcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 253  Q
    |||||||||||||||||| ||  | || |||||| |||||| |||||||||||||||||    
T  25844267 gcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagtgtc 25844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 40421951 - 40421999
Alignment:
Q  223 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacg 271  Q
    |||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  40421951 aaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactcacg 40421999  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 39126966 - 39127019
Alignment:
Q  241 tcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagtt 39127019  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 25485009 - 25485063
Alignment:
Q  240 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    |||||||||||| | | ||||||||| ||||| || |||||||||||||||||||    
T  25485009 atcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagtt 25485063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 34062700 - 34062624
Alignment:
Q  218 gactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    |||| |||||||||||||  | || ||||||||||| | ||||||| | ||||| |||||||||| || ||||||||    
T  34062700 gacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagtt 34062624  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 31419 - 31363
Alignment:
Q  238 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||| |||  ||||||||||| ||||| ||||||||| ||||||||||||    
T  31419 caatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagtt 31363  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 33617713 - 33617767
Alignment:
Q  240 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 294  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  33617713 atcttaaaagtatcgctatcagttaattcacgttgaaaaatgtcgagtgtgagtt 33617767  T

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