View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_168 (Length: 300)
Name: NF10855A_low_168
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_168 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 54181247 - 54180960
Alignment:
| Q |
13 |
attcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagcgttttgaagaaatagctactacaccctcaaattt |
112 |
Q |
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| T |
54181247 |
attcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagcgttttgaagaaatagctactacaccctcaaattt |
54181148 |
T |
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| Q |
113 |
ttcttcccatcttgatgaaactatttgttgtaccactactactaatcaaaacaatgttaccaatattggagccacatatgcacccgtagtttcccctcct |
212 |
Q |
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| T |
54181147 |
ttcttcccattttgatgaaactatttgttgtaccactactactaatcaaaacaatgttaccaatattggagccacatatgcacccatagtttcccctcct |
54181048 |
T |
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| Q |
213 |
ttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacggttatg |
300 |
Q |
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| T |
54181047 |
ttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatg |
54180960 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 1210295 - 1210362
Alignment:
| Q |
11 |
taattcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagc |
78 |
Q |
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| T |
1210295 |
taattattatttggctagcaataatagtggaatggcattcttacttcctaacatgaacaatgcaaagc |
1210362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 41947547 - 41947608
Alignment:
| Q |
17 |
ttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagc |
78 |
Q |
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| T |
41947547 |
ttatttggctagcaataatagtggaatgacattcttactttctaacatgaacaatgcaaagc |
41947608 |
T |
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