View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_169 (Length: 300)
Name: NF10855A_low_169
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_169 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 15755462 - 15755207
Alignment:
| Q |
7 |
ccttgttttatgaaaagggtatttatttgagcaatcattgcacttggaataaatgtagcagcccaaatagggattaagctaaggatttgtttggtttcct |
106 |
Q |
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| T |
15755462 |
ccttgttttatgaaaagggtatttatttgagcaatcattgcacttggaataaatgtggcaacccaaataggtattaagctaaggatttgtttggtttcct |
15755363 |
T |
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| Q |
107 |
ctacttgtgttattgtgcataccatccattcattactagtacttgaaccagtgtccacacatgccttattaaggaacctgcacatgtatacaaacaataa |
206 |
Q |
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| T |
15755362 |
ctacttgtgttattgtgcataacatccattcattactagtacttgaaccagtgtccacacatgccttgttaaggaacctgcacatgtatacaaacaagaa |
15755263 |
T |
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| Q |
207 |
tcaatatttgaaggtaagagaaaaataacaatacttagtctaacattctctttcta |
262 |
Q |
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| T |
15755262 |
ttaatattttaaaataagagaaaaataacaatacttagtctaacactctctttcta |
15755207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 15766331 - 15766150
Alignment:
| Q |
7 |
ccttgttttatgaaaagggtatttatttgagcaatcattgcacttggaataaatgtagcagcccaaatagggattaagctaaggatttgtttggtttcct |
106 |
Q |
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| T |
15766331 |
ccttgttttacaaaaagggtatttatttgagctatcattgcacttggaataaatgttgcaacccaaatagggactaagctaaggatttgtttggtttctt |
15766232 |
T |
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| Q |
107 |
ctacttgtgttattgtgcataccatccattcattactagtacttgaaccagtgtccacacatgccttattaaggaacctgca |
188 |
Q |
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| T |
15766231 |
ccacttgtgttactgtgcataacatccactcatcacttgcacttgaaccagtgtccacacatgccttgttaaggaatctgca |
15766150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 15779429 - 15779261
Alignment:
| Q |
24 |
ggtatttatttgagcaatcattgcacttggaataaatgtagcagcccaaatagggattaagctaaggatttgtttggtttcctctacttgtgttattgtg |
123 |
Q |
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| T |
15779429 |
ggtatttatctgagcaatcattgcactaggaataaatgtagcaacccaaatagggattacacttaggatttgtttggtctcctctacttgtgttatagga |
15779330 |
T |
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| Q |
124 |
cataccatccattcattactagtacttgaaccagtgtccacacatgccttattaaggaacctgcacatg |
192 |
Q |
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| T |
15779329 |
catatcatccactcgctactagttcttgaaccagtgtccacacaagccttattaaggaacctacacatg |
15779261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 15729726 - 15729682
Alignment:
| Q |
25 |
gtatttatttgagcaatcattgcacttggaataaatgtagcagcc |
69 |
Q |
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| T |
15729726 |
gtatttatttgagcaatcattgtactaggaattaatgtagtagcc |
15729682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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