View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_172 (Length: 297)
Name: NF10855A_low_172
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_172 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: scaffold0100 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 50459 - 50195
Alignment:
| Q |
21 |
gaaagatttcgaggaaatcgcgatcaaaggtagtgtggacatcttcttcctgctccggcgaccggaaagtgaaatccgagacgacggtgaaggtttcacc |
120 |
Q |
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| T |
50459 |
gaaagattgcgaggaaatcgcgatcaaaggtagtgtggacatcctcttcctgctccggcgaccggaaagtgaaatccgagacgacggcgaaggtttcacc |
50360 |
T |
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| Q |
121 |
gacttcattttccggcgaagcgacatcatgtttgtcaacaacctcaagctcgcgaagcttgcgctatgctcacagagcaagcaagtgtaggagtgtgatt |
220 |
Q |
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| T |
50359 |
gacttcattttccggcgaggcgacatcatgtttgtcaacaacctcaagctcgcgaagcttgcgctatgctaacagaacaagcaagtgtaggagtgtgatt |
50260 |
T |
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| Q |
221 |
gatgctgaaatcaaacgcgagacaccgcaggcggcgaagcttcgcgtgaagaatcctgccggaac |
285 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50259 |
gatgctgaaatcaaacgcgagacaccgccggcggcgaagcttcgcgtgaagaatcctgccggaac |
50195 |
T |
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