View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_175 (Length: 296)
Name: NF10855A_low_175
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_175 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 29442597 - 29442464
Alignment:
| Q |
7 |
gtaacagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttc |
99 |
Q |
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| T |
29442597 |
gtaacagagagaggattccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttc |
29442502 |
T |
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| Q |
100 |
ctttcttcctctccatgtacgacccaaatgcaacacag |
137 |
Q |
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| T |
29442501 |
ctttcttcctctccttgtacgacccaaatgcaacacag |
29442464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 29442391 - 29442311
Alignment:
| Q |
209 |
cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
289 |
Q |
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| T |
29442391 |
cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
29442311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 29424125 - 29424226
Alignment:
| Q |
7 |
gtaacagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt |
106 |
Q |
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| T |
29424125 |
gtaacagagagaggattccggtgagtatctccggcggaagatccgtcattgg-agcttggaagttaggttctagctagggtttagagtttttcatttctt |
29424223 |
T |
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| Q |
107 |
cct |
109 |
Q |
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||| |
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| T |
29424224 |
cct |
29424226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 29452589 - 29452537
Alignment:
| Q |
7 |
gtaacagagagaggattccggtaagtatctccggcggaagatccgccattgga |
59 |
Q |
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| T |
29452589 |
gtaacagagagaggataccggtaagtatctccggcggaagatccgccattgga |
29452537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
| Q |
57 |
ggaaggaaggaaggaaggttctagttagggtttagggt |
94 |
Q |
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| T |
29452503 |
ggaaggaaggaaggaaggttgtagctagggtttagggt |
29452466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
| Q |
49 |
ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt |
106 |
Q |
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| T |
10354101 |
ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt |
10354157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 9283404 - 9283343
Alignment:
| Q |
15 |
gagaggattccggtaagtatctccggcggaagatc---cgccattggaaggaaggaaggaag |
73 |
Q |
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|||| |||| ||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
9283404 |
gagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag |
9283343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
| Q |
36 |
tccggcggaagatccgccattggaaggaaggaagg |
70 |
Q |
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| T |
10336751 |
tccggcggaagatccgccattgtaaggaaggaagg |
10336785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 14551230 - 14551266
Alignment:
| Q |
7 |
gtaacagagagaggattccggtaagtatctccggcgg |
43 |
Q |
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| T |
14551230 |
gtaacagagagaggattctggtgagtatctccggcgg |
14551266 |
T |
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