View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_178 (Length: 294)

Name: NF10855A_low_178
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_178
NF10855A_low_178
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-288)||(58137-58415)
[»] chr1 (20 HSPs)
chr1 (208-278)||(49557087-49557157)
chr1 (208-279)||(49517016-49517087)
chr1 (218-279)||(30371104-30371165)
chr1 (219-282)||(34179922-34179985)
chr1 (208-282)||(38578473-38578547)
chr1 (210-271)||(15360842-15360903)
chr1 (222-279)||(27738233-27738290)
chr1 (219-279)||(25479538-25479598)
chr1 (219-279)||(28467360-28467420)
chr1 (208-275)||(4200175-4200242)
chr1 (220-279)||(7218127-7218186)
chr1 (208-279)||(17269196-17269267)
chr1 (208-279)||(40304107-40304178)
chr1 (208-246)||(14737791-14737829)
chr1 (212-277)||(28938052-28938117)
chr1 (213-279)||(36070201-36070267)
chr1 (208-246)||(36641821-36641859)
chr1 (208-277)||(29007771-29007840)
chr1 (235-279)||(25006087-25006131)
chr1 (209-245)||(44936677-44936713)
[»] scaffold0024 (1 HSPs)
scaffold0024 (208-282)||(27522-27596)
[»] chr7 (10 HSPs)
chr7 (213-279)||(1417215-1417281)
chr7 (213-282)||(30456500-30456569)
chr7 (208-266)||(28165037-28165095)
chr7 (208-246)||(39591553-39591591)
chr7 (208-278)||(49060486-49060556)
chr7 (208-245)||(5276170-5276207)
chr7 (219-284)||(9527138-9527203)
chr7 (213-282)||(30496655-30496724)
chr7 (219-279)||(5006562-5006622)
chr7 (208-276)||(45813236-45813304)
[»] chr4 (15 HSPs)
chr4 (208-282)||(49219085-49219159)
chr4 (213-284)||(24929444-24929515)
chr4 (210-279)||(8130122-8130191)
chr4 (220-276)||(18630638-18630694)
chr4 (227-279)||(32920453-32920505)
chr4 (213-272)||(4071833-4071892)
chr4 (213-276)||(10192235-10192298)
chr4 (208-279)||(29373940-29374011)
chr4 (208-266)||(30024646-30024704)
chr4 (213-246)||(41701527-41701560)
chr4 (214-279)||(55870394-55870459)
chr4 (205-245)||(23815313-23815353)
chr4 (208-279)||(27623581-27623655)
chr4 (213-273)||(44638232-44638292)
chr4 (219-279)||(53626733-53626793)
[»] chr6 (14 HSPs)
chr6 (208-279)||(4006660-4006731)
chr6 (208-247)||(28531626-28531665)
chr6 (208-282)||(9668035-9668109)
chr6 (219-279)||(2727909-2727969)
chr6 (205-245)||(5328917-5328957)
chr6 (208-287)||(10452405-10452484)
chr6 (208-279)||(29274282-29274353)
chr6 (228-278)||(5550098-5550148)
chr6 (208-246)||(24836285-24836323)
chr6 (213-246)||(5551413-5551446)
chr6 (219-279)||(281901-281961)
chr6 (207-279)||(1402941-1403013)
chr6 (205-245)||(2027493-2027533)
chr6 (219-279)||(11340678-11340738)
[»] chr3 (15 HSPs)
chr3 (208-279)||(24235736-24235807)
chr3 (208-277)||(48364934-48365003)
chr3 (208-277)||(48397592-48397661)
chr3 (208-279)||(10101529-10101600)
chr3 (208-279)||(10212454-10212525)
chr3 (208-274)||(20192664-20192730)
chr3 (212-278)||(22214735-22214801)
chr3 (208-280)||(48323767-48323839)
chr3 (205-245)||(54775071-54775111)
chr3 (208-279)||(24887336-24887407)
chr3 (208-280)||(1395617-1395689)
chr3 (221-269)||(26599137-26599185)
chr3 (208-276)||(30956682-30956750)
chr3 (208-276)||(30972494-30972562)
chr3 (208-256)||(39971265-39971313)
[»] chr8 (9 HSPs)
chr8 (208-282)||(38561672-38561746)
chr8 (227-279)||(6509356-6509408)
chr8 (215-275)||(34551073-34551133)
chr8 (223-279)||(34770853-34770909)
chr8 (208-279)||(12361138-12361209)
chr8 (208-279)||(42597347-42597418)
chr8 (208-245)||(26820145-26820182)
chr8 (208-245)||(40728505-40728542)
chr8 (209-245)||(29699201-29699237)
[»] chr2 (10 HSPs)
chr2 (222-279)||(11513858-11513915)
chr2 (208-279)||(10143118-10143189)
chr2 (208-282)||(43199360-43199434)
chr2 (205-245)||(43199186-43199226)
chr2 (208-279)||(39567849-39567920)
chr2 (213-275)||(10285304-10285366)
chr2 (208-282)||(28803556-28803630)
chr2 (208-245)||(3458603-3458640)
chr2 (223-279)||(6993777-6993833)
chr2 (208-276)||(11344340-11344408)
[»] chr5 (9 HSPs)
chr5 (209-280)||(37690689-37690760)
chr5 (209-279)||(37526252-37526322)
chr5 (209-279)||(37588413-37588483)
chr5 (171-246)||(21782655-21782727)
chr5 (212-279)||(39823174-39823241)
chr5 (213-273)||(42181151-42181211)
chr5 (208-279)||(18704089-18704159)
chr5 (213-275)||(14295457-14295519)
chr5 (213-282)||(4855649-4855718)
[»] scaffold0508 (1 HSPs)
scaffold0508 (208-279)||(9828-9899)
[»] scaffold0053 (1 HSPs)
scaffold0053 (213-279)||(20130-20196)
[»] scaffold0549 (2 HSPs)
scaffold0549 (219-279)||(1777-1837)
scaffold0549 (219-279)||(3867-3927)


Alignment Details
Target: scaffold0049 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 58415 - 58137
Alignment:
Q  1 aatatttgcttgttatatctttgtctccaccagagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58415 aatatttgcttgttatatctttgtctccaccagagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcag 58316  T
Q  101 ctttgtgactttttggtcgattagaggattgtaaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtgttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  58315 ctttgtgactttttggtcgattagaggattgtaaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtg---- 58220  T
Q  201 tagagtttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 288  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58219 -----tttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 49557087 - 49557157
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 278  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| || || |||||||||||||||||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 49517016 - 49517087
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| ||||||||||||||| |||||||||||| || || || || |||||||| |||||||||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 30371104 - 30371165
Alignment:
Q  218 atataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||||||||| ||||| |||||| || || ||||| ||||||||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 34179985 - 34179922
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    ||||||||||||||| |||||||||||| || ||||| || |||||||  ||||||||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaact 34179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 38578473 - 38578547
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    |||| ||||| ||||||||||||||||||||||| ||||  | ||  |||| |||||||||||||| ||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataaact 38578547  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  210 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgt 271  Q
    |||||||| ||||||||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 27738290 - 27738233
Alignment:
Q  222 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||||| |||||||||||| || || ||||| ||||||| ||||||||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 25479538 - 25479598
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||| |||||||| |||| ||||||| || || ||||| ||||||||||||||||||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataa 25479598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 28467420 - 28467360
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| ||||||||||||  | || ||||| |||| |||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 4200175 - 4200242
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 275  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||||| ||||||  ||||||||    
T  4200175 taagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatatattgttttc 4200242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 7218186 - 7218127
Alignment:
Q  220 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| ||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  7218186 ataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 17269196 - 17269267
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| || ||||||||  || |||||||||||| || || ||||| || |||||||||||||||||    
T  17269196 taagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 40304178 - 40304107
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||||||||||||||||||| ||||| ||| || || || ||||| | |||||| |||||||||||    
T  40304178 taagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa 40304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 14737829 - 14737791
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaat 246  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaat 14737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 28938052 - 28938117
Alignment:
Q  212 ttatttatataacaaaa-gataacataaagtcaaatagtattaatatacgctataagttgttttcat 277  Q
    |||||| |||||||||| |||||||||| |||||||  | || ||||||||||||||||||||||||    
T  28938052 ttatttttataacaaaaagataacataa-gtcaaatcattttcatatacgctataagttgttttcat 28938117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 36070201 - 36070267
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||| ||||||||||||||| ||||||| |||| || ||   ||| ||||||||||||||||||||    
T  36070201 tatttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 36641821 - 36641859
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaat 246  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36641821 taagttatttctataacaaaagataaaataaagtcaaat 36641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 29007840 - 29007771
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 277  Q
    |||||||||| |||||||||||| ||  ||||||||||   | || ||||| ||||||||||||||||||    
T  29007840 taagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 25006131 - 25006087
Alignment:
Q  235 ataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||||| || || ||||| ||||||||||||||||||||    
T  25006131 ataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 44936713 - 44936677
Alignment:
Q  209 aagttatttatataacaaaagataacataaagtcaaa 245  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaa 44936677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 27522 - 27596
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    |||||||||| ||||||| ||||||| |||||||||||| || || |||||  ||||||||||||||||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaact 27596  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 1417215 - 1417281
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||||||||| |||||||||||| || || ||||| || |||||||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 30456569 - 30456500
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    ||||| || |||||||||||| |||||||||||| || || ||||| | ||||||| |||||||||||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaact 30456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 28165037 - 28165095
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 266  Q
    |||||| ||| ||||||||||||||| || ||||||||| || |||||||| |||||||    
T  28165037 taagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataa 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 39591591 - 39591553
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaat 246  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaat 39591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 49060486 - 49060556
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 278  Q
    |||| ||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||| ||||||||    
T  49060486 taagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 5276170 - 5276207
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaa 245  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5276170 taagctatttttataacaaaagataacataaagtcaaa 5276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 9527203 - 9527138
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 284  Q
    ||||||||||||||  |||||||||||  || || |||||  ||||||||||||||||||| ||||    
T  9527203 tataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagctct 9527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 30496655 - 30496724
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    ||||| |||||||||| |||| |||||||||||| || ||  ||||  ||||| ||||||||||||||||    
T  30496655 tatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttcataaact 30496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 5006622 - 5006562
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| |||||||||||  || || ||||| | ||||| ||||||||||||    
T  5006622 tataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataa 5006562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 45813304 - 45813236
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 276  Q
    |||| ||||| |||| |||||||||| |||||||||| | || || |||||  ||||||||||||||||    
T  45813304 taagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 49219085 - 49219159
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    |||||||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||||||||||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaact 49219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 24929444 - 24929515
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 284  Q
    ||||| ||||||||||||||| |||||||| ||  || || ||| | |||||||||||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactct 24929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 8130122 - 8130191
Alignment:
Q  210 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||| ||||||||||||||||||||||||||||  | || ||||| |||||||  |||||||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataa 8130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 18630638 - 18630694
Alignment:
Q  220 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 276  Q
    |||||||||||||| |||||||||| | || || ||||| |||||||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgttttca 18630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 32920505 - 32920453
Alignment:
Q  227 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||| |||||||||||| || |||||| | ||||||||||||||||||||    
T  32920505 aagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataa 32920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 272  Q
    ||||| ||||||||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 10192235 - 10192298
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 276  Q
    ||||| ||||||||||||||  |||||||||||| || || ||||| | |||||||||||||||    
T  10192235 tatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttca 10192298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 29374011 - 29373940
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| ||||||| ||||||| |||| ||||||  ||||| ||||| ||||||| ||||||||||||    
T  29374011 taagctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttcataa 29373940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 30024646 - 30024704
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 266  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| |||||||    
T  30024646 taagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 41701560 - 41701527
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaat 246  Q
    ||||||||||||||||||||| ||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaat 41701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 55870459 - 55870394
Alignment:
Q  214 atttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||||||||||| | |||||||||||  || || | ||| ||||||||||||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataa 55870394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 23815313 - 23815353
Alignment:
Q  205 gtttaagttatttatataacaaaagataacataaagtcaaa 245  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  23815313 gtttaagttatttctataacaaaagataaaataatgtcaaa 23815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 27623581 - 27623655
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctat---aagttgttttcataa 279  Q
    |||| ||||| ||||||||||||||| |||||||||||   | |||||||| |||||   |||||||||||||||    
T  27623581 taagatatttgtataacaaaagataaaataaagtcaaactattttaatataagctataagaagttgttttcataa 27623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 44638292 - 44638232
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 273  Q
    ||||||||||||||||||| | ||||||| ||||   ||| ||||| ||||||||||||||    
T  44638292 tatttatataacaaaagattatataaagttaaattacattcatataagctataagttgttt 44638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 53626733 - 53626793
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| ||||| |||||  || || ||||| |||||||| |||||||||||    
T  53626733 tataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcataa 53626793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 4006660 - 4006731
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaata 247  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 9668109 - 9668035
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    |||| ||||| ||||||||||||||||||| |||| ||| || || ||||| |||| || |||||||||||||||    
T  9668109 taagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaact 9668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 2727969 - 2727909
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||    
T  2727969 tataacaaaagataaacaaaaatcaaattgtattgatataagctataagttgttttcataa 2727909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  205 gtttaagttatttatataacaaaagataacataaagtcaaa 245  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 10452484 - 10452405
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctc 287  Q
    |||| ||||| |||||||||| |||| ||||| |||||   | || ||||| |||||||||||||| |||||||||||||    
T  10452484 taagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataaactctctc 10452405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 29274353 - 29274282
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| |||| |||||||||| |||||||||||| || || ||||| |||||||  |||||||||||    
T  29274353 taagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 5550098 - 5550148
Alignment:
Q  228 agataacataaagtcaaatagtattaatatacgctataagttgttttcata 278  Q
    ||||||||||||||||||| || || ||||| |||||||| ||||||||||    
T  5550098 agataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 24836323 - 24836285
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaat 246  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  24836323 taagttatttctataacaaaagataaaataaagtcaaat 24836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 5551413 - 5551446
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaat 246  Q
    ||||||||||||||||||||| ||||||||||||    
T  5551413 tatttatataacaaaagataaaataaagtcaaat 5551446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 281961 - 281901
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| |||||||||| | || || ||||| |||||||| ||| |||||||    
T  281961 tataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataa 281901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 1402941 - 1403013
Alignment:
Q  207 ttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||| ||||| ||||||||||||||| ||||||| |||   | || ||||| ||||||| ||||||||||||    
T  1402941 ttaagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataa 1403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 2027533 - 2027493
Alignment:
Q  205 gtttaagttatttatataacaaaagataacataaagtcaaa 245  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  2027533 gtttaagctatttttataacaaaagataaaataaagtcaaa 2027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 11340738 - 11340678
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  11340738 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 11340678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 24235807 - 24235736
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| ||||||||||||||| |||||||||||   | | |||||| ||||||||||||||||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataa 24235736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 48365003 - 48364934
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 277  Q
    ||||||||||  |||||||||||||| |||||||||||| || || || ||||| |||||||||||||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 48397592 - 48397661
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 277  Q
    |||||||||| ||||| ||||||||| |||||||||||| || || || || ||||||||||||||||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 10101600 - 10101529
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 10212525 - 10212454
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 20192730 - 20192664
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtttt 274  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| ||||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 22214801 - 22214735
Alignment:
Q  212 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 278  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||| |||||  ||||||||||||||||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 48323767 - 48323839
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 280  Q
    |||||||||| ||||| ||||||||| |||||||||||| || ||  | || ||||||| |||||||||||||    
T  48323767 taagttatttctataataaaagataatataaagtcaaattgtttttctgtaagctataaattgttttcataaa 48323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  205 gtttaagttatttatataacaaaagataacataaagtcaaa 245  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 24887407 - 24887336
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| |||||||| |||||| |||||||||||  ||||| ||||| |||| ||| |||||||||||    
T  24887407 taagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataa 24887336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 1395617 - 1395689
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 280  Q
    |||| ||||| ||||||||||||||| ||||||||||||  | || ||||| ||||| |  ||||||||||||    
T  1395617 taagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcataaa 1395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 26599137 - 26599185
Alignment:
Q  221 taacaaaagataacataaagtcaaatagtattaatatacgctataagtt 269  Q
    ||||||||||||| ||||||||||||||| || ||||| | ||||||||    
T  26599137 taacaaaagataaaataaagtcaaatagttttcatataaggtataagtt 26599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 30956750 - 30956682
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 276  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30956750 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 30972562 - 30972494
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 276  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30972562 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 39971265 - 39971313
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaata 256  Q
    ||||||| |||||||||||||||||| |||||| ||||| || ||||||    
T  39971265 taagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 38561672 - 38561746
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    |||||||||||||||||||||||||| |||||||||||   | || || ||  ||||||||||||||||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaact 38561746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 6509408 - 6509356
Alignment:
Q  227 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataa 6509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 34551073 - 34551133
Alignment:
Q  215 tttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 275  Q
    |||||||||||||||||||||| ||||||||| || || || || | ||||||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttc 34551133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 34770853 - 34770909
Alignment:
Q  223 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||| |||||||||||| || || || || ||||||||||||||||||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 12361138 - 12361209
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| |||||  |||||||| || ||||||||| || || ||||| |||||||| |||||||||||    
T  12361138 taagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 42597347 - 42597418
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || || ||  | ||||||||||||||||||||    
T  42597347 taagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 26820145 - 26820182
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaa 245  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 40728542 - 40728505
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaa 245  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 29699201 - 29699237
Alignment:
Q  209 aagttatttatataacaaaagataacataaagtcaaa 245  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 11513858 - 11513915
Alignment:
Q  222 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 10143118 - 10143189
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| ||||||||||||||| || ||||||||  || || ||||| |||||||||| |||||||||    
T  10143118 taagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataa 10143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 43199360 - 43199434
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    |||||||||| || |||||||||||| ||||||| ||||  | ||  |||| |||||||||||||||||||||||    
T  43199360 taagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaact 43199434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  205 gtttaagttatttatataacaaaagataacataaagtcaaa 245  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 39567849 - 39567920
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || | || ||| |||||||| |||||||||||    
T  39567849 taagatatttctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttcataa 39567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 10285304 - 10285366
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 275  Q
    ||||| ||||||||||| ||| |||| |||||||||  || ||||| ||||||||||||||||    
T  10285304 tatttctataacaaaagttaaaataatgtcaaataggttttatataagctataagttgttttc 10285366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 28803630 - 28803556
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    ||||||||||  |||||||||||||| |||||||||||  |  || ||||| |||| ||||||||||| ||||||    
T  28803630 taagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaact 28803556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 3458603 - 3458640
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaa 245  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaa 3458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 6993833 - 6993777
Alignment:
Q  223 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||| |||| |||||||  |||| ||||| |||||| |||||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcataa 6993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 11344408 - 11344340
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 276  Q
    |||| ||||| ||||||||||||||| | |||||||||| || || ||| | ||||||| |||||||||    
T  11344408 taagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 37690760 - 37690689
Alignment:
Q  209 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 280  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| |||||||||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaa 37690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 37526322 - 37526252
Alignment:
Q  209 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37526252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 37588483 - 37588413
Alignment:
Q  209 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37588413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 21782727 - 21782655
Alignment:
Q  171 gtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 246  Q
    ||||||| | |||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||| ||||||||||||    
T  21782727 gtttggataaacaacttaattaagtgtttat---gtttaagctatttctataacaaaagctaaaataaagtcaaat 21782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 39823241 - 39823174
Alignment:
Q  212 ttatttatataacaaaagataacataaagtcaaa-tagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||||||||||||||| ||||||||||| || | || ||||| |||| |||||||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactact-ttcatataagctacaagttgttttcataa 39823174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 42181211 - 42181151
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 273  Q
    ||||| ||||||||||||||| | |||||||||| || || ||||| ||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgttt 42181151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 18704159 - 18704089
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| ||||||||||||||| ||||||||||    | || ||||| ||||||||||||||||||||    
T  18704159 taagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctataagttgttttcataa 18704089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 14295457 - 14295519
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 275  Q
    ||||| ||||||||||||||| |||||||||||  || || ||||| |||||||| |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 4855649 - 4855718
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 282  Q
    ||||| |||||||||| |||| ||||||| |||| ||  | ||||| | |||||||||||||||||||||    
T  4855649 tatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcataaact 4855718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 9899 - 9828
Alignment:
Q  208 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    |||||||||| |||||||||| |||| || |||||||| ||| || ||||| | |||| |||||||||||||    
T  9899 taagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataagttataggttgttttcataa 9828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 20130 - 20196
Alignment:
Q  213 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||| |||||| |||||||| ||||||||||| |||  | ||||| ||||| ||||||||||||||    
T  20130 tatttctataaccaaagataaaataaagtcaaacagttatcatataagctattagttgttttcataa 20196  T

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Target: scaffold0549 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 1837 - 1777
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  1837 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 1777  T

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Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 3927 - 3867
Alignment:
Q  219 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 279  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  3927 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 3867  T

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