View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_181 (Length: 293)
Name: NF10855A_low_181
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_181 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 45123582 - 45123313
Alignment:
| Q |
7 |
ctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaac |
106 |
Q |
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| T |
45123582 |
ctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaac |
45123483 |
T |
|
| Q |
107 |
atttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcagaaagcggaga |
206 |
Q |
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| T |
45123482 |
atttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggaga |
45123383 |
T |
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| Q |
207 |
cgaaactatgatcattgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagac |
276 |
Q |
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| T |
45123382 |
cgaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagac |
45123313 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
220 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
267 |
Q |
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| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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